SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: SWIB complex BAF60b domain-containing protein
Primary source: TAIR:AT1G49520
Locus tag: AT1G49520
See related: Araport:AT1G49520
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F13F21.4; F13F21_4
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 8

Sequence:: Chromosome: 1; NC_003070.9 (18329659..18332102)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

MASC_STS13117 (e-PCR)
- UniSTS:258601

Homology

Orthologs from OrthoDB

NM_103840.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: SWIB complex BAF60b domain-containing protein

NP_175375.2

SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT3G19080.1); Has 3197 Blast hits to 1975 proteins in 305 species: Archae - 0; Bacteria - 439; Metazoa - 696; Fungi - 468; Plants - 732; Viruses - 19; Other Eukaryotes - 843 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

18329659..18332102

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_103840.3 → NP_175375.2 SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_175375.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A654EIP0, A0A7G2E0Z6, Q501B9

Conserved Domains (2) summary

cd10567
Location:255 → 325

SWIB-MDM2_like; SWIB/MDM2 domain found in SWIB/MDM2 homologous proteins

pfam08766
Location:2 → 55

DEK_C; DEK C terminal domain