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    Uncharacterized protein family (UPF0016) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843195, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Uncharacterized protein family (UPF0016)
    Primary source
    TAIR:AT1G68650
    Locus tag
    AT1G68650
    See related
    Araport:AT1G68650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24J5.11; F24J5_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (25775731..25777910)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PLAC8 family protein Neighboring gene bZIP transcription factor family protein Neighboring gene ncRNA Neighboring gene Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein Neighboring gene myb-like transcription factor family protein Neighboring gene SH3/FCH domain protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Homologous Proteins of the Manganese Transporter PAM71 Are Localized in the Golgi Apparatus and Endoplasmic Reticulum. Hoecker N, et al. Plants (Basel), 2020 Feb 13. PMID 32069796, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_105537.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Uncharacterized protein family (UPF0016)
    NP_177032.1
    • Uncharacterized protein family (UPF0016); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G25520.1); Has 1855 Blast hits to 1773 proteins in 684 species: Archae - 37; Bacteria - 1050; Metazoa - 159; Fungi - 141; Plants - 212; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25775731..25777910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105537.5 → NP_177032.1  Uncharacterized protein family (UPF0016) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177032.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SX28
      UniProtKB/TrEMBL
      A0A178WLG8, A0A5S9WSS1, A0A654ENS4
      Conserved Domains (1) summary
      COG2119
      Location:5 → 228
      Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SX28.1

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