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    MYB117 myb domain protein 117 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839219, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB117
    Official Full Name
    myb domain protein 117
    Primary source
    TAIR:AT1G26780
    Locus tag
    AT1G26780
    See related
    Araport:AT1G26780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB117; LATERAL ORGAN FUSION 1; LOF1; myb domain protein 117; T24P13.16; T24P13_16
    Summary
    Encodes LOF1 (LATERAL ORGAN FUSION1), a MYB-domain transcription factor expressed in organ boundaries. Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF2 (At1g69560).
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    Genomic context

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    See MYB117 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (9270952..9272713)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene expansin A10 Neighboring gene uncharacterized protein Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene Plant self-incompatibility protein S1 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MYB117 is a negative regulator of flowering time in Arabidopsis. Hong L, et al. Plant Signal Behav, 2021 May 4. PMID 33779489, Free PMC Article
    2. Characterization of constricted fruit (ctf) mutant uncovers a role for AtMYB117/LOF1 in ovule and fruit development in Arabidopsis thaliana. Gomez MD, et al. PLoS One, 2011 Apr 13. PMID 21533201, Free PMC Article
    3. LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis. Lee DK, et al. Development, 2009 Jul. PMID 19542355
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MYB117 is a negative regulator of flowering time in Arabidopsis.
      Title: MYB117 is a negative regulator of flowering time in Arabidopsis.
    2. results suggest that AtMYB117/LOF1 is recruited by a variety of developmental programs for the establishment of boundary regions, including the development of floral organs and the initiation of ovule outgrowth
      Title: Characterization of constricted fruit (ctf) mutant uncovers a role for AtMYB117/LOF1 in ovule and fruit development in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001160897.2
    NM_102441.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within organ boundary specification between lateral organs and the meristem IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 117
    NP_001154369.1
    • myb domain protein 117 (MYB117); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 105 (TAIR:AT1G69560.1); Has 8894 Blast hits to 7964 proteins in 558 species: Archae - 0; Bacteria - 0; Metazoa - 920; Fungi - 607; Plants - 5396; Viruses - 5; Other Eukaryotes - 1966 (source: NCBI BLink).
    NP_564261.1
    • myb domain protein 117 (MYB117); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 105 (TAIR:AT1G69560.1); Has 8859 Blast hits to 7959 proteins in 558 species: Archae - 0; Bacteria - 0; Metazoa - 904; Fungi - 604; Plants - 5383; Viruses - 5; Other Eukaryotes - 1963 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9270952..9272713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160897.2 → NP_001154369.1  myb domain protein 117 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154369.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0ME93, Q9C5P9, Q9LQX5
      UniProtKB/TrEMBL
      A0A178WCI3, A0A5S9W1Q8
      Conserved Domains (1) summary
      PLN03091
      Location:96 → 201
      PLN03091; hypothetical protein; Provisional

    2. NM_102441.3 → NP_564261.1  myb domain protein 117 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564261.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LQX5
      Conserved Domains (2) summary
      smart00717
      Location:98 → 146
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:98 → 144
      Myb_DNA-binding; Myb-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LQX5.1

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