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    PAP85 cupin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821835, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PAP85
    Official Full Name
    cupin family protein
    Primary source
    TAIR:AT3G22640
    Locus tag
    AT3G22640
    See related
    Araport:AT3G22640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See PAP85 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (8011724..8013941, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene ncRNA Neighboring gene 20S proteasome beta subunit D1 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene rRNA processing protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A vicilin-like seed storage protein, PAP85, is involved in tobacco mosaic virus replication. Chen CE, et al. J Virol, 2013 Jun. PMID 23576511, Free PMC Article
    2. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
    3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PAP85 (annotated as a vicilin-like seed storage protein), was upregulated during 0.5 to 6 h of Tobacco mosaic virus infection.
      Title: A vicilin-like seed storage protein, PAP85, is involved in tobacco mosaic virus replication.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_113163.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to virus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in response to virus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cupin family protein
    NP_566714.1
    • PAP85; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, seed; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G36700.1); Has 886 Blast hits to 876 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 826; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8011724..8013941 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113163.4 → NP_566714.1  cupin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566714.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q42160, Q42174, Q42222, Q42326, Q56WF0, Q9LUJ7
      UniProtKB/TrEMBL
      A0A178V8B4, A0A5S9XEM8
      Conserved Domains (2) summary
      cd02244
      Location:74 → 253
      cupin_7S_vicilin-like_N; 7S vicilin seed storage globulin, N-terminal cupin domain
      cd02245
      Location:285 → 457
      cupin_7S_vicilin-like_C; 7S vicilin seed storage globulin, C-terminal cupin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LUJ7.1

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