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    HMT-1 Homocysteine S-methyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822186, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HMT-1
    Official Full Name
    Homocysteine S-methyltransferase family protein
    Primary source
    TAIR:AT3G25900
    Locus tag
    AT3G25900
    See related
    Araport:AT3G25900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATHMT-1
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    Genomic context

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    See HMT-1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (9480746..9482962)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene NIM1-interacting 2 Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene CLAVATA3/ESR-RELATED 27 Neighboring gene MAP kinase kinase kinase, putative (DUF1644) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and functional expression of cDNAs encoding methionine-sensitive and -insensitive homocysteine S-methyltransferases from Arabidopsis. Ranocha P, et al. J Biol Chem, 2000 May 26. PMID 10747987
    2. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203048.1
    NM_202632.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables S-adenosylmethionine-homocysteine S-methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables S-methylmethionine-homocysteine S-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within methionine biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in methionine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Homocysteine S-methyltransferase family protein
    NP_001189977.1
    • HMT-1; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1).
    NP_189219.1
    • HMT-1; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6959 Blast hits to 6951 proteins in 1900 species: Archae - 4; Bacteria - 4284; Metazoa - 376; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1997 (source: NCBI BLink).
    NP_974361.1
    • HMT-1; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9480746..9482962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113493.5 → NP_189219.1  Homocysteine S-methyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189219.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SDL7
      UniProtKB/TrEMBL
      A0A5S9XFN4, A0A7G2EPB2
      Conserved Domains (1) summary
      PLN02489
      Location:1 → 326
      PLN02489; homocysteine S-methyltransferase

    2. NM_001203048.1 → NP_001189977.1  Homocysteine S-methyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189977.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XFN4, A0A654FAP2, F4JBA7
      Conserved Domains (1) summary
      PLN02489
      Location:1 → 306
      PLN02489; homocysteine S-methyltransferase

    3. NM_202632.1 → NP_974361.1  Homocysteine S-methyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974361.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JBA8
      Conserved Domains (1) summary
      PLN02489
      Location:1 → 259
      PLN02489; homocysteine S-methyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SDL7.1

    Gene LinkOut

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