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    BSD domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822080, updated on 18-Sep-2024

    Summary

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    Official Full Name
    BSD domain-containing protein
    Primary source
    TAIR:AT3G24820
    Locus tag
    AT3G24820
    See related
    Araport:AT3G24820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (9062354..9064476, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene proteolysis 1 Neighboring gene Cyclin-dependent kinase inhibitor family protein Neighboring gene Ribosomal protein L13 family protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_113394.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    BSD domain-containing protein
    NP_566755.1
    • BSD domain-containing protein; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 175 Blast hits to 175 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9062354..9064476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113394.3 → NP_566755.1  BSD domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566755.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VIQ6, A0A384KPK5, Q9LRX9
      Conserved Domains (1) summary
      smart00751
      Location:89 → 137
      BSD; domain in transcription factors and synapse-associated proteins
    Nucleotide Protein
    Heading Accession and Version

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