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    HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843858, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
    Primary source
    TAIR:AT1G75210
    Locus tag
    AT1G75210
    See related
    Araport:AT1G75210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22H5.7; F22H5_7
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    16
    Sequence:
    Chromosome: 1; NC_003070.9 (28223836..28229082)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene flavodoxin family protein / radical SAM domain-containing protein Neighboring gene Major facilitator superfamily protein Neighboring gene DNA glycosylase superfamily protein Neighboring gene homeobox protein 33

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_106177.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase
    NP_177657.2
    • HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase; FUNCTIONS IN: 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (InterPro:IPR008380), Purine 5'-nucleotidase (InterPro:IPR016695); BEST Arabidopsis thaliana protein match is: HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (TAIR:AT5G48960.1); Has 679 Blast hits to 675 proteins in 116 species: Archae - 0; Bacteria - 48; Metazoa - 445; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28223836..28229082
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334679.1 → NP_001320403.1  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5R3, A0A1P8AMS8, A0A5S9WUH4
      Conserved Domains (1) summary
      pfam05761
      Location:54 → 534
      5_nucleotid; 5' nucleotidase family

    2. NM_001334680.1 → NP_001320404.1  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5R3, A0A1P8AMS8, A0A5S9WUH4
      Conserved Domains (1) summary
      pfam05761
      Location:54 → 534
      5_nucleotid; 5' nucleotidase family

    3. NM_106177.4 → NP_177657.2  HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177657.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5R3, Q8RWN4
      Conserved Domains (1) summary
      pfam05761
      Location:157 → 637
      5_nucleotid; 5' nucleotidase family
    Nucleotide Protein
    Heading Accession and Version

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