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    RGTB2 RAB geranylgeranyl transferase beta subunit 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820381, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RGTB2
    Official Full Name
    RAB geranylgeranyl transferase beta subunit 2
    Primary source
    TAIR:AT3G12070
    Locus tag
    AT3G12070
    See related
    Araport:AT3G12070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRGTB2; RAB geranylgeranyl transferase beta subunit 2
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    Genomic context

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    See RGTB2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (3844772..3847586, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene DNA-3-methyladenine glycosylase (MAG) Neighboring gene Aha1 domain-containing protein Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene GTP-binding family protein Neighboring gene tetraspanin6 Neighboring gene Cation efflux family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rab geranylgeranyl transferase β subunit is essential for male fertility and tip growth in Arabidopsis. Gutkowska M, et al. J Exp Bot, 2015 Jan. PMID 25316062, Free PMC Article
    2. Arabidopsis Rab Geranylgeranyltransferases Demonstrate Redundancy and Broad Substrate Specificity in Vitro. Shi W, et al. J Biol Chem, 2016 Jan 15. PMID 26589801, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001337972.1
    NM_001337973.1
    NM_112041.3
    NM_180236.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables Rab geranylgeranyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables Rab geranylgeranyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein geranylgeranylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Rab-protein geranylgeranyltransferase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RAB geranylgeranyl transferase beta subunit 2
    NP_187814.1
    • RAB geranylgeranyl transferase beta subunit 2 (RGTB2); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 1 (TAIR:AT5G12210.1); Has 1529 Blast hits to 1352 proteins in 256 species: Archae - 0; Bacteria - 31; Metazoa - 548; Fungi - 456; Plants - 198; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).
    NP_850567.1
    • RAB geranylgeranyl transferase beta subunit 2; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 1 (TAIR:AT5G12210.1); Has 1529 Blast hits to 1352 proteins in 256 species: Archae - 0; Bacteria - 31; Metazoa - 548; Fungi - 456; Plants - 198; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3844772..3847586 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180236.4 → NP_850567.1  RAB geranylgeranyl transferase beta subunit 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850567.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFX5, Q9LHL5
      UniProtKB/TrEMBL
      A0A178VBX3
      Conserved Domains (2) summary
      PLN03201
      Location:1 → 316
      PLN03201; RAB geranylgeranyl transferase beta-subunit; Provisional
      cd02894
      Location:5 → 291
      GGTase-II; Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying ...

    2. NM_112041.3 → NP_187814.1  RAB geranylgeranyl transferase beta subunit 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187814.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFX5, Q9LHL5
      UniProtKB/TrEMBL
      A0A178VBX3
      Conserved Domains (2) summary
      PLN03201
      Location:1 → 316
      PLN03201; RAB geranylgeranyl transferase beta-subunit; Provisional
      cd02894
      Location:5 → 291
      GGTase-II; Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying ...

    3. NM_001337972.1 → NP_001327836.1  RAB geranylgeranyl transferase beta subunit 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFX5, Q9LHL5
      UniProtKB/TrEMBL
      A0A178VBX3

    4. NM_001337973.1 → NP_001327837.1  RAB geranylgeranyl transferase beta subunit 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTJ2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LHL5.1

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