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    RAD3-like DNA-binding helicase protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838662, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RAD3-like DNA-binding helicase protein
    Primary source
    TAIR:AT1G20720
    Locus tag
    AT1G20720
    See related
    Araport:AT1G20720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2D10.21; F2D10_21
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    29
    Sequence:
    Chromosome: 1; NC_003070.9 (7185288..7192841, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene WUSCHEL related homeobox 14 Neighboring gene WUSCHEL related homeobox 10 Neighboring gene transport/golgi organization-like protein, putative (DUF833) Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101924.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RAD3-like DNA-binding helicase protein
    NP_173495.5
    • RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20750.1); Has 2863 Blast hits to 2328 proteins in 675 species: Archae - 243; Bacteria - 679; Metazoa - 737; Fungi - 397; Plants - 210; Viruses - 5; Other Eukaryotes - 592 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7185288..7192841 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332462.1 → NP_001322805.1  RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WI34, A0A1P8AV25, A0A654EDH9

    2. NM_101924.6 → NP_173495.5  RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173495.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WI34, A0A654EDH9, F4HUN4
      Conserved Domains (3) summary
      TIGR00604
      Location:31 → 770
      rad3; DNA repair helicase (rad3)
      pfam13307
      Location:556 → 763
      Helicase_C_2; Helicase C-terminal domain
      cl21455
      Location:32 → 318
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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