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    double-stranded DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839863, updated on 18-Sep-2024

    Summary

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    Official Full Name
    double-stranded DNA-binding family protein
    Primary source
    TAIR:AT1G29850
    Locus tag
    AT1G29850
    See related
    Araport:AT1G29850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1N18.11; F1N18_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (10447347..10449969)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Magnesium transporter CorA-like family protein Neighboring gene Magnesium transporter CorA-like family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene WRKY DNA-binding protein 71 Neighboring gene tRNA synthetase class II (G, H, P and S) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtPDCD5 plays a role during dark-senescence in Arabidopsis. Falcone Ferreyra ML, et al. Plant Signal Behav, 2016 Jun 2. PMID 27096161, Free PMC Article
    2. AtPDCD5 Plays a Role in Programmed Cell Death after UV-B Exposure in Arabidopsis. Falcone Ferreyra ML, et al. Plant Physiol, 2016 Apr. PMID 26884483, Free PMC Article
    3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001332876.1
    NM_102725.5
    NM_179397.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables damaged DNA binding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within programmed cell death IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    double-stranded DNA-binding family protein
    NP_001319109.1
    • double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836); Has 679 Blast hits to 679 proteins in 318 species: Archae - 256; Bacteria - 0; Metazoa - 134; Fungi - 121; Plants - 56; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
    NP_564336.1
    • double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836); Has 689 Blast hits to 689 proteins in 324 species: Archae - 253; Bacteria - 2; Metazoa - 140; Fungi - 128; Plants - 54; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
    NP_849728.1
    • double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836); Has 693 Blast hits to 693 proteins in 323 species: Archae - 253; Bacteria - 0; Metazoa - 146; Fungi - 128; Plants - 52; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10447347..10449969
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102725.5 → NP_564336.1  double-stranded DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564336.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2K7, Q8LBF6, Q9FXG0
      Conserved Domains (1) summary
      pfam01984
      Location:9 → 123
      dsDNA_bind; Double-stranded DNA-binding domain

    2. NM_001332876.1 → NP_001319109.1  double-stranded DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I354

    3. NM_179397.2 → NP_849728.1  double-stranded DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849728.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4B8, F4I355
      Conserved Domains (1) summary
      pfam01984
      Location:9 → 111
      dsDNA_bind; Double-stranded DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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