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    Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827426, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ankyrin repeat family protein
    Primary source
    TAIR:AT4G03490
    Locus tag
    AT4G03490
    See related
    Araport:AT4G03490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9H3.12; F9H3_12
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (1549176..1554159, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ankyrin repeat family protein Neighboring gene Ankyrin repeat family protein Neighboring gene uncharacterized protein Neighboring gene Ankyrin repeat family protein Neighboring gene uncharacterized protein Neighboring gene RING membrane-anchor 1 Neighboring gene Thioredoxin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203740.1
    NM_001340457.1
    NM_001340458.1
    NM_001340459.1
    NM_116587.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ankyrin repeat family protein
    NP_001190669.1
    • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03500.1).
    NP_192258.5
    • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03500.1); Has 23858 Blast hits to 12012 proteins in 533 species: Archae - 27; Bacteria - 1611; Metazoa - 14070; Fungi - 1809; Plants - 2208; Viruses - 91; Other Eukaryotes - 4042 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1549176..1554159 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203740.1 → NP_001190669.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190669.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JG88
      Conserved Domains (5) summary
      cd00204
      Location:216 → 343
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:191 → 283
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:294 → 346
      Ank_4; Ankyrin repeats (many copies)
      pfam13962
      Location:379 → 489
      PGG; Domain of unknown function
      sd00045
      Location:257 → 289
      ANK; ANK repeat [structural motif]

    2. NM_116587.6 → NP_192258.5  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192258.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JG87, Q9ZT77
      Conserved Domains (5) summary
      cd00204
      Location:226 → 353
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:201 → 293
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:304 → 356
      Ank_4; Ankyrin repeats (many copies)
      pfam13962
      Location:389 → 499
      PGG; Domain of unknown function
      sd00045
      Location:267 → 299
      ANK; ANK repeat [structural motif]

    3. NM_001340457.1 → NP_001328102.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3M4, A0A7G2EY87

    4. NM_001340458.1 → NP_001328101.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3N1, A0A7G2EY87

    5. NM_001340459.1 → NP_001328100.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3L8, A0A7G2EY87
    Nucleotide Protein
    Heading Accession and Version

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