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    ECIP1 MA3 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828582, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ECIP1
    Official Full Name
    MA3 domain-containing protein
    Primary source
    TAIR:AT4G24800
    Locus tag
    AT4G24800
    See related
    Araport:AT4G24800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EIN2 C-terminus Interacting Protein 1; F6I7.10; F6I7_10
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    Genomic context

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    See ECIP1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (12781762..12785238)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene AAA-type ATPase family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene 26S proteasome regulatory subunit Rpn7 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EIN2 regulates salt stress response and interacts with a MA3 domain-containing protein ECIP1 in Arabidopsis. Lei G, et al. Plant Cell Environ, 2011 Oct. PMID 21631530
    2. MRF Family Genes Are Involved in Translation Control, Especially under Energy-Deficient Conditions, and Their Expression and Functions Are Modulated by the TOR Signaling Pathway. Lee DH, et al. Plant Cell, 2017 Nov. PMID 29084871, Free PMC Article
    3. Identification of Open Stomata1-Interacting Proteins Reveals Interactions with Sucrose Non-fermenting1-Related Protein Kinases2 and with Type 2A Protein Phosphatases That Function in Abscisic Acid Responses. Waadt R, et al. Plant Physiol, 2015 Sep. PMID 26175513, Free PMC Article
    4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data show that MRF (MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR) family genes encode translation regulatory factors under target of rapamycin (TOR) control, and their functions are particularly important in energy-deficient conditions.
      Title: MRF Family Genes Are Involved in Translation Control, Especially under Energy-Deficient Conditions, and Their Expression and Functions Are Modulated by the TOR Signaling Pathway.
    2. Interactions between ECIP1 (At4g24800) and EIN2 or ethylene receptors regulate ethylene response and stress response.
      Title: EIN2 regulates salt stress response and interacts with a MA3 domain-containing protein ECIP1 in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203899.1
    NM_118613.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ribosome binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to absence of light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to carbon starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to ethylene IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MA3 domain-containing protein
    NP_001031708.1
    • MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001190828.1
    • MA3 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2).
    NP_567708.1
    • MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12781762..12785238
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341710.1 → NP_001329945.1  MA3 domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178V3H6, Q56XH1, Q8W4Q4, Q9SZX0
      UniProtKB/TrEMBL
      A0A384KU64, A0A5S9XVN1
      Conserved Domains (2) summary
      smart00544
      Location:117 → 228
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
      pfam02847
      Location:579 → 688
      MA3; MA3 domain

    2. NM_001036631.1 → NP_001031708.1  MA3 domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031708.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178V3H6, Q56XH1, Q8W4Q4, Q9SZX0
      UniProtKB/TrEMBL
      A0A384KU64, A0A5S9XVN1
      Conserved Domains (2) summary
      smart00544
      Location:117 → 228
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
      pfam02847
      Location:579 → 688
      MA3; MA3 domain

    3. NM_001203899.1 → NP_001190828.1  MA3 domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190828.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178V3H6, Q56XH1, Q8W4Q4, Q9SZX0
      UniProtKB/TrEMBL
      A0A384KU64, A0A5S9XVN1
      Conserved Domains (2) summary
      smart00544
      Location:117 → 228
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
      pfam02847
      Location:579 → 688
      MA3; MA3 domain

    4. NM_118613.3 → NP_567708.1  MA3 domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567708.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178V3H6, Q56XH1, Q8W4Q4, Q9SZX0
      UniProtKB/TrEMBL
      A0A384KU64, A0A5S9XVN1
      Conserved Domains (2) summary
      smart00544
      Location:117 → 228
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
      pfam02847
      Location:579 → 688
      MA3; MA3 domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8W4Q4.1

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