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    Ribosomal L28e protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829062, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal L28e protein family
    Primary source
    TAIR:AT4G29410
    Locus tag
    AT4G29410
    See related
    Araport:AT4G29410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17A13.230; F17A13_230
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (14468205..14470197, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene protein kinase family protein / WD-40 repeat family protein Neighboring gene Ribosomal protein S30 family protein Neighboring gene oxidoreductase/transition metal ion-binding protein (DUF3531) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Pro Neighboring gene F-box/RNI-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    2. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    3. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    4. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085001.1
    NM_119086.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal L28e protein family
    NP_001078470.1
    • Ribosomal L28e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT2G19730.3); Has 531 Blast hits to 531 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 94; Plants - 107; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
    NP_194670.1
    • Ribosomal L28e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT2G19730.3); Has 531 Blast hits to 531 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 94; Plants - 107; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14468205..14470197 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119086.4 → NP_194670.1  Ribosomal L28e protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194670.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M0E2
      UniProtKB/TrEMBL
      A0A178UVV8, A0A5S9XWZ6, A0A654FTY1
      Conserved Domains (1) summary
      pfam01778
      Location:8 → 125
      Ribosomal_L28e; Ribosomal L28e protein family

    2. NM_001085001.1 → NP_001078470.1  Ribosomal L28e protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078470.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M0E2
      UniProtKB/TrEMBL
      A0A178UVV8, A0A5S9XWZ6, A0A654FTY1
      Conserved Domains (1) summary
      pfam01778
      Location:8 → 125
      Ribosomal_L28e; Ribosomal L28e protein family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M0E2.1

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