U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Low temperature and salt responsive protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829189, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Low temperature and salt responsive protein family
    Primary source
    TAIR:AT4G30660
    Locus tag
    AT4G30660
    See related
    Araport:AT4G30660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10C21.10; T10C21_10
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (14955373..14956171)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RNI-like superfamily protein Neighboring gene Low temperature and salt responsive protein family Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Putative membrane lipoprotein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001160806.1
    NM_119212.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Low temperature and salt responsive protein family
    NP_001154278.1
    • Low temperature and salt responsive protein family; INVOLVED IN: response to cold, hyperosmotic salinity response; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT2G24040.1); Has 1255 Blast hits to 1255 proteins in 413 species: Archae - 0; Bacteria - 524; Metazoa - 40; Fungi - 292; Plants - 377; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    NP_194795.1
    • Low temperature and salt responsive protein family; INVOLVED IN: response to cold, hyperosmotic salinity response; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT2G24040.1); Has 1253 Blast hits to 1253 proteins in 413 species: Archae - 0; Bacteria - 522; Metazoa - 40; Fungi - 292; Plants - 377; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14955373..14956171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119212.4 → NP_194795.1  Low temperature and salt responsive protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194795.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1A6K9, Q9SUI0
      UniProtKB/TrEMBL
      A0A178UYE9, A0A5S9XXT1, B9DGR8
      Conserved Domains (1) summary
      pfam01679
      Location:8 → 56
      Pmp3; Proteolipid membrane potential modulator

    2. NM_001160806.1 → NP_001154278.1  Low temperature and salt responsive protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154278.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1A6K9, Q9SUI0
      UniProtKB/TrEMBL
      A0A178UYE9, A0A5S9XXT1, B9DGR8
      Conserved Domains (1) summary
      pfam01679
      Location:8 → 56
      Pmp3; Proteolipid membrane potential modulator
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SUI0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools