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    ARLA1B ADP-ribosylation factor-like A1B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824148, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARLA1B
    Official Full Name
    ADP-ribosylation factor-like A1B
    Primary source
    TAIR:AT3G49860
    Locus tag
    AT3G49860
    See related
    Araport:AT3G49860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ADP-ribosylation factor-like A1B; ATARLA1B
    Summary
    A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.
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    Genomic context

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    See ARLA1B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (18491084..18492241, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cysteine-rich TM module stress tolerance protein Neighboring gene telomere repeat binding factor 3 Neighboring gene ADP-ribosylation factor-like A1C Neighboring gene glycosyl hydrolase family protein 43

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A host small GTP-binding protein ARL8 plays crucial roles in tobamovirus RNA replication. Nishikiori M, et al. PLoS Pathog, 2011 Dec. PMID 22174675, Free PMC Article
    2. Analysis of the small GTPase gene superfamily of Arabidopsis. Vernoud V, et al. Plant Physiol, 2003 Mar. PMID 12644670, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114846.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to virus IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ADP-ribosylation factor-like A1B
    NP_190555.2
    • ADP-ribosylation factor-like A1B (ARLA1B); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, male gametophyte, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase SAR1-type (InterPro:IPR006687), Ras small GTPase, Ras type (InterPro:IPR003577), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor-like A1C (TAIR:AT3G49870.1); Has 16899 Blast hits to 16895 proteins in 575 species: Archae - 10; Bacteria - 254; Metazoa - 7961; Fungi - 2407; Plants - 2569; Viruses - 3; Other Eukaryotes - 3695 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18491084..18492241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114846.4 → NP_190555.2  ADP-ribosylation factor-like A1B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190555.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IZ82, Q9M2X2
      UniProtKB/TrEMBL
      A0A178VHR4, A0A7G2ESS8
      Conserved Domains (1) summary
      cd04159
      Location:13 → 171
      Arl10_like; Arf-like 9 (Arl9) and 10 (Arl10) GTPases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IZ82.1

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