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    beige/BEACH domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825263, updated on 18-Sep-2024

    Summary

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    Official Full Name
    beige/BEACH domain protein
    Primary source
    TAIR:AT3G60920
    Locus tag
    AT3G60920
    See related
    Araport:AT3G60920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    27
    Sequence:
    Chromosome: 3; NC_003074.8 (22503328..22513244, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene FASCICLIN-like arabinogalactan-protein 10 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115956.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    beige/BEACH domain protein
    NP_191651.3
    • CONTAINS InterPro DOMAIN/s: Beige/BEACH (InterPro:IPR000409); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / beige-related (TAIR:AT2G45540.1); Has 1795 Blast hits to 1563 proteins in 214 species: Archae - 2; Bacteria - 29; Metazoa - 830; Fungi - 160; Plants - 230; Viruses - 0; Other Eukaryotes - 544 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22503328..22513244 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340063.1 → NP_001325702.1  beige/BEACH domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM19

    2. NM_115956.3 → NP_191651.3  beige/BEACH domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191651.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JD14, Q9LEX9
      Conserved Domains (3) summary
      smart01026
      Location:1679 → 1901
      Beach; Beige/BEACH domain
      pfam14844
      Location:1555 → 1653
      PH_BEACH; PH domain associated with Beige/BEACH
      pfam15787
      Location:319 → 575
      DUF4704; Domain of unknown function (DUF4704)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JD14.1

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