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    TRM21 methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834410, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM21
    Official Full Name
    methyl-coenzyme M reductase II subunit gamma, putative (DUF3741)
    Primary source
    TAIR:AT5G43880
    Locus tag
    AT5G43880
    See related
    Araport:AT5G43880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6B6.2; F6B6_2; TON1 Recruiting Motif 21
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    Genomic context

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    See TRM21 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (17639776..17643982, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RmlC-like cupins superfamily protein Neighboring gene auxin canalization protein (DUF828) Neighboring gene chlorophyllase 2 Neighboring gene Flavin-binding monooxygenase family protein Neighboring gene myosin 2 Neighboring gene pfkB-like carbohydrate kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001344508.1
    NM_001344509.1
    NM_001344510.1
    NM_123755.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    methyl-coenzyme M reductase II subunit gamma, putative (DUF3741)
    NP_199201.1
    • Protein of unknown function (DUF3741); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17639776..17643982 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123755.4 → NP_199201.1  methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199201.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEZ0, Q9LKC1
      Conserved Domains (2) summary
      pfam12552
      Location:155 → 198
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:664 → 814
      DUF4378; Domain of unknown function (DUF4378)

    2. NM_001344508.1 → NP_001332579.1  methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEZ0, Q9LKC1
      Conserved Domains (2) summary
      pfam12552
      Location:155 → 198
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:664 → 814
      DUF4378; Domain of unknown function (DUF4378)

    3. NM_001344509.1 → NP_001332578.1  methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEZ0, Q9LKC1
      Conserved Domains (2) summary
      pfam12552
      Location:155 → 198
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:664 → 814
      DUF4378; Domain of unknown function (DUF4378)

    4. NM_001344510.1 → NP_001332580.1  methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEZ0, Q9LKC1
      Conserved Domains (2) summary
      pfam12552
      Location:155 → 198
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:664 → 814
      DUF4378; Domain of unknown function (DUF4378)
    Nucleotide Protein
    Heading Accession and Version

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