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    CcdA cytochrome c biogenesis protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835517, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CcdA
    Official Full Name
    cytochrome c biogenesis protein family
    Primary source
    TAIR:AT5G54290
    Locus tag
    AT5G54290
    See related
    Araport:AT5G54290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Encodes CcdA, a thylakoid membrane protein required for the transfer of reducing equivalents from stroma to thylakoid lumen.
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    Genomic context

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    See CcdA in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (22051034..22054028)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DNA repair and meiosis protein (Mre11) Neighboring gene light-harvesting chlorophyll B-binding protein 3 Neighboring gene myosin 2 Neighboring gene cotton fiber-like protein (DUF761) Neighboring gene ncRNA Neighboring gene ARF-GAP domain 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CcdA is a thylakoid membrane protein required for the transfer of reducing equivalents from stroma to thylakoid lumen in the higher plant chloroplast. Motohashi K, et al. Antioxid Redox Signal, 2010 Oct. PMID 20214498
    2. A homolog of prokaryotic thiol disulfide transporter CcdA is required for the assembly of the cytochrome b6f complex in Arabidopsis chloroplasts. Page ML, et al. J Biol Chem, 2004 Jul 30. PMID 15159384
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The results CcdA may act as a mediator in thylakoid membranes by transferring reducing equivalents from the stromal to the lumenal side of the thylakoid membrane in chloroplasts.
      Title: CcdA is a thylakoid membrane protein required for the transfer of reducing equivalents from stroma to thylakoid lumen in the higher plant chloroplast.
    Submit: New GeneRIF Correction

    General gene information

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    NM_124809.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell redox homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cytochrome b6f complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cytochrome complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome c biogenesis protein family
    NP_001190537.1
    • CcdA; CONTAINS InterPro DOMAIN/s: Cytochrome c assembly protein, transmembrane domain (InterPro:IPR003834).
    NP_200240.1
    • CcdA; CONTAINS InterPro DOMAIN/s: Cytochrome c assembly protein, transmembrane domain (InterPro:IPR003834); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22051034..22054028
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203608.1 → NP_001190537.1  cytochrome c biogenesis protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190537.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GBE0, F4K0A8
      Conserved Domains (1) summary
      cl21514
      Location:137 → 344
      TauE; Sulfite exporter TauE/SafE

    2. NM_124809.3 → NP_200240.1  cytochrome c biogenesis protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200240.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBH9, Q93Y53, Q9M5P3
      UniProtKB/TrEMBL
      A0A654GBE0
      Conserved Domains (1) summary
      cl21514
      Location:136 → 343
      TauE; Sulfite exporter TauE/SafE
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M5P3.1

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