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    ferric reductase-like transmembrane component family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836123, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ferric reductase-like transmembrane component family protein
    Primary source
    TAIR:AT5G60010
    Locus tag
    AT5G60010
    See related
    Araport:AT5G60010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MMN10.18; MMN10_18; RbohH; Respiratory burst oxidase homolog H
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (24160270..24165052)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CCT motif family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene laccase 17 Neighboring gene miscRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Apoplastic ROS production upon pollination by RbohH and RbohJ in Arabidopsis. Kaya H, et al. Plant Signal Behav, 2015. PMID 25751652, Free PMC Article
    2. ANXUR receptor-like kinases coordinate cell wall integrity with growth at the pollen tube tip via NADPH oxidases. Boisson-Dernier A, et al. PLoS Biol, 2013 Nov. PMID 24302886, Free PMC Article
    3. Production of reactive oxygen species by plant NADPH oxidases. Sagi M, et al. Plant Physiol, 2006 Jun. PMID 16760484, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. apoplastic reactive oxygen species derived from RbohH and RbohJ are involved in pollen tube elongation into the stigmatic papillae by affecting the cell wall metabolism.[RbohH]
      Title: Apoplastic ROS production upon pollination by RbohH and RbohJ in Arabidopsis.
    2. Disruption of the pollen expressed NADPH oxidases RbohH and RbohJ triggers altered reproductive phenotypes.
      Title: ANXUR receptor-like kinases coordinate cell wall integrity with growth at the pollen tube tip via NADPH oxidases.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ferric reductase-like transmembrane component family protein
    NP_200809.4
    • ferric reductase-like transmembrane component family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: ferric reductase-like transmembrane component family protein (TAIR:AT3G45810.1); Has 1927 Blast hits to 1788 proteins in 283 species: Archae - 0; Bacteria - 154; Metazoa - 723; Fungi - 353; Plants - 523; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24160270..24165052
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125394.5 → NP_200809.4  ferric reductase-like transmembrane component family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200809.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FJD6
      UniProtKB/TrEMBL
      A0A178UE14, A0A5S9YFN7, A0A654GD88
      Conserved Domains (5) summary
      cd06186
      Location:559 → 886
      NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
      pfam08030
      Location:690 → 869
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam01794
      Location:365 → 511
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08414
      Location:97 → 198
      NADPH_Ox; Respiratory burst NADPH oxidase
      pfam13499
      Location:197 → 269
      EF-hand_7; EF-hand domain pair
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FJD6.1

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