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    RALFL33 ralf-like 33 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827260, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RALFL33
    Official Full Name
    ralf-like 33
    Primary source
    TAIR:AT4G15800
    Locus tag
    AT4G15800
    See related
    Araport:AT4G15800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3940C; FCAALL.206; ralf-like 33
    Summary
    Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
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    Genomic context

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    See RALFL33 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (8984787..8985995)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene vesicle-associated membrane protein 724 Neighboring gene uveal autoantigen with coiled-coil/ankyrin Neighboring gene ncRNA Neighboring gene heat shock factor binding protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for multiple receptors mediating RALF-triggered Ca(2+) signaling and proton pump inhibition. Gjetting SK, et al. Plant J, 2020 Oct. PMID 32713048
    2. Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs. Olsen AN, et al. In Silico Biol, 2002. PMID 12611624
    3. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Evidence for multiple receptors mediating RALF-triggered Ca(2+) signaling and proton pump inhibition.
      Title: Evidence for multiple receptors mediating RALF-triggered Ca(2+) signaling and proton pump inhibition.
    Submit: New GeneRIF Correction

    General gene information

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    NM_117672.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hormone activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in calcium-mediated signaling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within cell-cell signaling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    ralf-like 33
    NP_567476.1
    • ralf-like 33 (RALFL33); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: rapid alkalinization factor 23 (TAIR:AT3G16570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8984787..8985995
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117672.2 → NP_567476.1  ralf-like 33 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567476.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9P8
      UniProtKB/TrEMBL
      A0A178V522, A0A5S9XT10, A0A654FPQ9
      Conserved Domains (1) summary
      PLN03222
      Location:1 → 116
      PLN03222; rapid alkalinization factor 23-like protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L9P8.1

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