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    MAPRE3 microtubule associated protein RP/EB family member 3 [ Homo sapiens (human) ]

    Gene ID: 22924, updated on 3-Dec-2024

    Summary

    Official Symbol
    MAPRE3provided by HGNC
    Official Full Name
    microtubule associated protein RP/EB family member 3provided by HGNC
    Primary source
    HGNC:HGNC:6892
    See related
    Ensembl:ENSG00000084764 MIM:605788; AllianceGenome:HGNC:6892
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    EB3; RP3; EBF3; EBF3-S
    Summary
    The protein encoded by this gene is a member of the RP/EB family of genes. The protein localizes to the cytoplasmic microtubule network and binds APCL, a homolog of the adenomatous polyposis coli tumor suppressor gene. [provided by RefSeq, Jul 2008]
    Expression
    Broad expression in brain (RPKM 45.3), testis (RPKM 13.7) and 20 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See MAPRE3 in Genome Data Viewer
    Location:
    2p23.3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (26970637..27027219)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (27012305..27068902)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (27193505..27250087)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene dihydropyrimidinase like 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15480 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:27135238-27135875 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:27136064-27137020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:27157221-27157720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:27172437-27172937 Neighboring gene uncharacterized LOC124905979 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15481 Neighboring gene MAPRE3 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:27247061-27247851 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15482 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:27261678-27262877 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15483 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11279 Neighboring gene transmembrane protein 214 Neighboring gene AGBL5 antisense RNA 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables microtubule binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables microtubule plus-end binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in cell division IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    involved_in positive regulation of cyclin-dependent protein serine/threonine kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    involved_in positive regulation of protein kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in protein localization TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in protein localization to microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of microtubule polymerization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of microtubule polymerization or depolymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in spindle assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    is_active_in cytoplasmic microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    colocalizes_with cytoplasmic microtubule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in microtubule cytoskeleton IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in microtubule organizing center IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in microtubule plus-end IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in midbody ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    located_in mitotic spindle astral microtubule end IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in spindle midzone IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    microtubule-associated protein RP/EB family member 3
    Names
    APC binding protein
    EB1 protein family member 3
    end-binding protein 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001303050.2NP_001289979.1  microtubule-associated protein RP/EB family member 3 isoform 1

      See identical proteins and their annotated locations for NP_001289979.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants encode the same protein.
      Source sequence(s)
      AB025186, AC013472, BC011557, BM560331, HY011071
      Consensus CDS
      CCDS1731.1
      UniProtKB/Swiss-Prot
      B7WPK5, O00265, Q6FHB0, Q6FI15, Q9BZP7, Q9BZP8, Q9UPY8
      UniProtKB/TrEMBL
      B2R5W6
      Conserved Domains (1) summary
      COG5217
      Location:16279
      BIM1; Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
    2. NM_001410716.1NP_001397645.1  microtubule-associated protein RP/EB family member 3 isoform 2

      Status: REVIEWED

      Source sequence(s)
      AC013472
      Consensus CDS
      CCDS92722.1
      UniProtKB/TrEMBL
      B2R5W6
      Related
      ENSP00000383915.3, ENST00000405074.7
    3. NM_012326.4NP_036458.2  microtubule-associated protein RP/EB family member 3 isoform 1

      See identical proteins and their annotated locations for NP_036458.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants encode the same protein.
      Source sequence(s)
      AB025186, AC013472, BC011557, DC417465
      Consensus CDS
      CCDS1731.1
      UniProtKB/Swiss-Prot
      B7WPK5, O00265, Q6FHB0, Q6FI15, Q9BZP7, Q9BZP8, Q9UPY8
      UniProtKB/TrEMBL
      B2R5W6
      Related
      ENSP00000233121.2, ENST00000233121.7
      Conserved Domains (1) summary
      COG5217
      Location:16279
      BIM1; Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      26970637..27027219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047443728.1XP_047299684.1  microtubule-associated protein RP/EB family member 3 isoform X1

      UniProtKB/Swiss-Prot
      B7WPK5, O00265, Q6FHB0, Q6FI15, Q9BZP7, Q9BZP8, Q9UPY8
      UniProtKB/TrEMBL
      B2R5W6

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      27012305..27068902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054341040.1XP_054197015.1  microtubule-associated protein RP/EB family member 3 isoform X1

      UniProtKB/Swiss-Prot
      B7WPK5, O00265, Q6FHB0, Q6FI15, Q9BZP7, Q9BZP8, Q9UPY8
      UniProtKB/TrEMBL
      B2R5W6