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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001278613.2 → NP_001265542.1 protocadherin-1 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has an alternate 5' exon and lacks two 3' exons. Its transcription extends past a splice site that is used in variant 2, resulting in a novel 3' coding region and 3' UTR compared to variant 2. It encodes isoform 3 which is shorter and has a distinct C-terminus, compared to isoform 2.
- Source sequence(s)
-
AK300564, AK304231, BC035812, HO663512
- UniProtKB/TrEMBL
-
B4E2D8
- Related
-
ENST00000357517.6
- Conserved Domains (3) summary
-
- cd11304
Location:528 → 624
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam08374
Location:831 → 1042
- Protocadherin; Protocadherin
- cl09101
Location:76 → 154
- E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
-
NM_001278615.1 → NP_001265544.1 protocadherin-1 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks two 5' and 3' exons, respectively. It has an alternate 5' exon and its transcription extends past a splice site that is used in variant 2, resulting in a novel 3' coding region and 3' UTR compared to variant 2. It encodes isoform 4 which has a shorter N-terminus and a shorter and distinct C-terminus, compared to isoform 2.
- Source sequence(s)
-
AK308338, BC035812
- UniProtKB/TrEMBL
-
B4DUA8
- Related
-
ENST00000511044.1
- Conserved Domains (2) summary
-
- cd11304
Location:133 → 229
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam08374
Location:436 → 647
- Protocadherin; Protocadherin
-
NM_002587.5 → NP_002578.2 protocadherin-1 isoform 1 precursor
See identical proteins and their annotated locations for NP_002578.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) lacks two exons and its transcription extends past a splice site that is used in variant 2, resulting in a novel 3' coding region and 3' UTR compared to variant 2. It encodes isoform 1 which is shorter and has a distinct C-terminus, compared to isoform 2.
- Source sequence(s)
-
AK289512, AK304231, BC035812
- Consensus CDS
-
CCDS43375.1
- UniProtKB/Swiss-Prot
- Q08174, Q8IUP2
- UniProtKB/TrEMBL
-
A8K0E7
- Related
- ENSP00000378043.3, ENST00000394536.4
- Conserved Domains (3) summary
-
- cd11304
Location:512 → 608
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam08374
Location:815 → 1026
- Protocadherin; Protocadherin
- cl09101
Location:60 → 138
- E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
-
NM_032420.5 → NP_115796.2 protocadherin-1 isoform 2 precursor
See identical proteins and their annotated locations for NP_115796.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) represents the longest transcript and encodes the longest isoform (2).
- Source sequence(s)
-
AC094107, AK304231, BC035812, BM680840, DA096772, L11369
- Consensus CDS
-
CCDS4267.1
- UniProtKB/TrEMBL
-
A8K0E7
- Related
- ENSP00000287008.3, ENST00000287008.8
- Conserved Domains (3) summary
-
- cd11304
Location:512 → 608
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam08374
Location:815 → 1026
- Protocadherin; Protocadherin
- cl09101
Location:60 → 138
- E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
141853090..141878410 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005268452.4 → XP_005268509.2 protocadherin-1 isoform X1
- UniProtKB/TrEMBL
-
B3KQM8
- Conserved Domains (3) summary
-
- cd11304
Location:528 → 624
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam08374
Location:831 → 1042
- Protocadherin
- cl09101
Location:76 → 154
- E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
-
XM_005268454.6 → XP_005268511.2 protocadherin-1 isoform X2
- UniProtKB/TrEMBL
-
B4E2D8
- Conserved Domains (3) summary
-
- cd11304
Location:528 → 624
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam08374
Location:831 → 1042
- Protocadherin
- cl09101
Location:76 → 154
- E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
-
XM_017009517.3 → XP_016865006.1 protocadherin-1 isoform X3
- UniProtKB/TrEMBL
-
B3KQM8
- Conserved Domains (2) summary
-
- cd11304
Location:133 → 229
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam08374
Location:436 → 647
- Protocadherin; Protocadherin
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
142379045..142404656 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054352706.1 → XP_054208681.1 protocadherin-1 isoform X4
- UniProtKB/TrEMBL
-
B3KQM8
-
XM_054352705.1 → XP_054208680.1 protocadherin-1 isoform X1
- UniProtKB/TrEMBL
-
B3KQM8
-
XM_054352707.1 → XP_054208682.1 protocadherin-1 isoform X2
- UniProtKB/TrEMBL
-
B4E2D8
-
XM_054352708.1 → XP_054208683.1 protocadherin-1 isoform X3
- UniProtKB/TrEMBL
-
B3KQM8