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    • Showing Current items.

    C03H5.5 TPR_REGION domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 182182, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C03H5.5
    Official Full Name
    TPR_REGION domain-containing protein
    Primary source
    WormBase:WBGene00015407
    Locus tag
    CELE_C03H5.5
    See related
    AllianceGenome:WB:WBGene00015407
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C03H5.5 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    8
    Sequence:
    Chromosome: II; NC_003280.10 (382309..385358, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Phospholipase A2 Neighboring gene Serpentine Receptor, class T Neighboring gene Seven TM Receptor Neighboring gene SRF-dependent transcription regulation-associated protein Neighboring gene UDP-N-acetylglucosamine/UDP-N-acetylgalactosaminetransporter nstp-4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translational initiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of eukaryotic translation initiation factor 3 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of eukaryotic translation initiation factor 3 complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TPR_REGION domain-containing protein
    NP_493721.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      382309..385358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061320.5 → NP_493721.2  TPR_REGION domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16656
      Conserved Domains (1) summary
      pfam10255
      Location:179 → 307
      Paf67; RNA polymerase I-associated factor PAF67
    Nucleotide Protein
    Heading Accession and Version

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