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    EXPA6 expansin A6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817444, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EXPA6
    Official Full Name
    expansin A6
    Primary source
    TAIR:AT2G28950
    Locus tag
    AT2G28950
    See related
    Araport:AT2G28950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA TEXPANSIN 6; ATEXP6; ATEXPA6; ATHEXP ALPHA 1.8; expansin A6; T9I4.3; T9I4_3
    Summary
    Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
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    Genomic context

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    See EXPA6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (12431338..12433796, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Leucine-rich repeat protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expansins are involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Wieczorek K, et al. Plant J, 2006 Oct. PMID 16942607
    2. Expansins: ever-expanding numbers and functions. Lee Y, et al. Curr Opin Plant Biol, 2001 Dec. PMID 11641069
    3. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_128454.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type cell wall loosening NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in plant-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within syncytium formation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within unidimensional cell growth NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    expansin A6
    NP_180461.1
    • expansin A6 (EXPA6); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2139 Blast hits to 2136 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 24; Plants - 2081; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12431338..12433796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128454.3 → NP_180461.1  expansin A6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180461.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81065, Q38865, Q8LDV8
      UniProtKB/TrEMBL
      A0A178VZL6, A0A5S9X2B4, A0A7G2EEP3
      Conserved Domains (1) summary
      PLN00050
      Location:1 → 255
      PLN00050; expansin A; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q38865.2

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