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    IBR domain containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816681, updated on 18-Sep-2024

    Summary

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    Official Full Name
    IBR domain containing protein
    Primary source
    TAIR:AT2G21420
    Locus tag
    AT2G21420
    See related
    Araport:AT2G21420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3K23.18; F3K23_18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (9169713..9171746)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene SHI-related sequence3 Neighboring gene vacuolar proton ATPase A2 Neighboring gene Papain family cysteine protease Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene chromatin remodeling 34

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RBR-Type E3 Ligases and the Ubiquitin-Conjugating Enzyme UBC26 Regulate Abscisic Acid Receptor Levels and Signaling. Fernandez MA, et al. Plant Physiol, 2020 Apr. PMID 31699847, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    IBR domain containing protein
    NP_179737.1
    • IBR domain containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G37560.1); Has 87308 Blast hits to 18333 proteins in 957 species: Archae - 370; Bacteria - 41195; Metazoa - 14245; Fungi - 8075; Plants - 4321; Viruses - 1278; Other Eukaryotes - 17824 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9169713..9171746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127714.1 → NP_179737.1  IBR domain containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179737.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1PF24, Q9SJT6
      Conserved Domains (3) summary
      smart00647
      Location:254 → 320
      IBR; In Between Ring fingers
      pfam01485
      Location:337 → 380
      IBR; IBR domain, a half RING-finger domain
      cl14782
      Location:101 → 171
      RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
    Nucleotide Protein
    Heading Accession and Version

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