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    CYCT1;3 cyclin T 1;3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839655, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CYCT1;3
    Official Full Name
    cyclin T 1;3
    Primary source
    TAIR:AT1G27630
    Locus tag
    AT1G27630
    See related
    Araport:AT1G27630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cyclin T 1;3; T22C5.8
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    Genomic context

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    See CYCT1;3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (9611053..9614336)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene uncharacterized protein Neighboring gene U2 snRNP auxiliary factor small subunit Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Roles of Arabidopsis cyclin-dependent kinase C complexes in cauliflower mosaic virus infection, plant growth, and development. Cui X, et al. Plant Cell, 2007 Apr. PMID 17468259, Free PMC Article
    2. Novel complexes of cyclin-dependent kinases and a cyclin-like protein from Arabidopsis thaliana with a function unrelated to cell division. Barrôco RM, et al. Cell Mol Life Sci, 2003 Feb. PMID 12678503, Free PMC Article
    3. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    4. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001332774.1
    NM_001332775.1
    NM_001332776.1
    NM_001332777.1
    NM_102528.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cyclin T 1;3
    NP_174084.1
    • cyclin T 1;3 (CYCT1;3); CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G45190.1); Has 1569 Blast hits to 1569 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 847; Fungi - 342; Plants - 269; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9611053..9614336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332773.1 → NP_001321314.1  cyclin T 1;3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIC2, A0A1P8AQQ8, A0A384LFV3
      Conserved Domains (2) summary
      cd20588
      Location:92 → 181
      CYCLIN_AcCycT_rpt2; second cyclin box found in Arabidopsis thaliana T-type cyclins (CycTs) and similar proteins
      cl40454
      Location:1 → 88
      CYCLIN_SF; Cyclin box fold superfamily

    2. NM_102528.4 → NP_174084.1  cyclin T 1;3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174084.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBC0, Q9SFZ4, Q9SFZ5, Q9SXC3
      UniProtKB/TrEMBL
      A0A5S9W5D4, A0A654ED97, A0A7G2DWZ7
      Conserved Domains (2) summary
      cd20587
      Location:50 → 173
      CYCLIN_AcCycT_rpt1; first cyclin box found in Arabidopsis thaliana T-type cyclins (CycTs) and similar proteins
      cd20588
      Location:177 → 266
      CYCLIN_AcCycT_rpt2; second cyclin box found in Arabidopsis thaliana T-type cyclins (CycTs) and similar proteins

    3. NM_001332774.1 → NP_001321315.1  cyclin T 1;3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIC2, A0A1P8AQQ8, A0A384LFV3
      Conserved Domains (2) summary
      cd20588
      Location:92 → 181
      CYCLIN_AcCycT_rpt2; second cyclin box found in Arabidopsis thaliana T-type cyclins (CycTs) and similar proteins
      cl40454
      Location:1 → 88
      CYCLIN_SF; Cyclin box fold superfamily

    4. NM_001332775.1 → NP_001321316.1  cyclin T 1;3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQH3

    5. NM_001332776.1 → NP_001321317.1  cyclin T 1;3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIC2, A0A1P8AQQ8, A0A384LFV3
      Conserved Domains (2) summary
      cd20588
      Location:92 → 181
      CYCLIN_AcCycT_rpt2; second cyclin box found in Arabidopsis thaliana T-type cyclins (CycTs) and similar proteins
      cl40454
      Location:1 → 88
      CYCLIN_SF; Cyclin box fold superfamily

    6. NM_001332777.1 → NP_001321318.1  cyclin T 1;3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIC2, A0A1P8AQQ8, A0A384LFV3
      Conserved Domains (2) summary
      cd20588
      Location:92 → 181
      CYCLIN_AcCycT_rpt2; second cyclin box found in Arabidopsis thaliana T-type cyclins (CycTs) and similar proteins
      cl40454
      Location:1 → 88
      CYCLIN_SF; Cyclin box fold superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LBC0.2

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