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    acyl-CoA thioesterase II [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839254, updated on 18-Sep-2024

    Summary

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    Official Full Name
    acyl-CoA thioesterase II
    Primary source
    TAIR:AT1G01710
    Locus tag
    AT1G01710
    See related
    Araport:AT1G01710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1N6.10; T1N6.9; T1N6_10; T1N6_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    17
    Sequence:
    Chromosome: 1; NC_003070.9 (262828..266324)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RHO guanyl-nucleotide exchange factor 2 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Biochemical and molecular characterization of ACH2, an acyl-CoA thioesterase from Arabidopsis thaliana. Tilton GB, et al. J Biol Chem, 2004 Feb 27. PMID 14660652
    2. Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Reumann S, et al. Plant Cell, 2007 Oct. PMID 17951448, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100053.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables fatty acyl-CoA hydrolase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables long-chain fatty acyl-CoA hydrolase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables medium-chain fatty acyl-CoA hydrolase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in acyl-CoA metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein homotetramerization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome HDA PubMed 

    General protein information

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    Preferred Names
    acyl-CoA thioesterase II
    NP_563632.2
    • Acyl-CoA thioesterase family protein; FUNCTIONS IN: cyclic nucleotide binding, acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT4G00520.2); Has 3628 Blast hits to 3595 proteins in 999 species: Archae - 0; Bacteria - 1940; Metazoa - 444; Fungi - 348; Plants - 71; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      262828..266324
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100053.4 → NP_563632.2  acyl-CoA thioesterase II [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563632.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HU51, Q56XD4, Q8GYW7, Q9LQ87, Q9LQ88
      UniProtKB/TrEMBL
      A0A178W7C0, A0A654E5W5
      Conserved Domains (1) summary
      PLN02868
      Location:1 → 413
      PLN02868; acyl-CoA thioesterase family protein
    Nucleotide Protein
    Heading Accession and Version

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