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    PnsB4 NDH dependent flow 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838455, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PnsB4
    Official Full Name
    NDH dependent flow 6
    Primary source
    TAIR:AT1G18730
    Locus tag
    AT1G18730
    See related
    Araport:AT1G18730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6A14.16; F6A14_16; NDF6; NDH dependent flow 6; Photosynthetic NDH subcomplex B 4
    Summary
    likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.
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    Genomic context

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    See PnsB4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (6460403..6462344)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene myb domain protein 47 Neighboring gene ER membrane protein, putative (DUF962) Neighboring gene ncRNA Neighboring gene ROH1, putative (DUF793) Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NDF6: a thylakoid protein specific to terrestrial plants is essential for activity of chloroplastic NAD(P)H dehydrogenase in Arabidopsis. Ishikawa N, et al. Plant Cell Physiol, 2008 Jul. PMID 18535009
    2. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NDF6 is a novel subunit of chloroplastic NDH that was added to terrestrial plants during evolution. [NDF6]
      Title: NDF6: a thylakoid protein specific to terrestrial plants is essential for activity of chloroplastic NAD(P)H dehydrogenase in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084090.2
    NM_001123834.1
    NM_001123835.4
    NM_001332365.1
    NM_101731.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in photosynthetic electron transport in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within photosynthetic electron transport in photosystem I TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NAD(P)H dehydrogenase complex (plastoquinone) IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of NAD(P)H dehydrogenase complex (plastoquinone) IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    part_of NAD(P)H dehydrogenase complex (plastoquinone) NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    NDH dependent flow 6
    NP_001077559.2
    • NDH dependent flow 6 (NDF6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001117306.1
    • NDH dependent flow 6 (NDF6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001117307.1
    • NDH dependent flow 6 (NDF6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_173308.2
    • NDH dependent flow 6 (NDF6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6460403..6462344
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101731.5 → NP_173308.2  NDH dependent flow 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173308.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RXS1, Q9M9U4
      UniProtKB/TrEMBL
      A0A654EB62
      Conserved Domains (1) summary
      PLN00180
      Location:4 → 175
      PLN00180; NDF6 (NDH-dependent flow 6); Provisional

    2. NM_001123835.4 → NP_001117307.1  NDH dependent flow 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117307.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H6Z4
      Conserved Domains (1) summary
      PLN00180
      Location:4 → 137
      PLN00180; NDF6 (NDH-dependent flow 6); Provisional

    3. NM_001084090.2 → NP_001077559.2  NDH dependent flow 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077559.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRZ5
      Conserved Domains (1) summary
      PLN00180
      Location:4 → 137
      PLN00180; NDF6 (NDH-dependent flow 6); Provisional

    4. NM_001123834.1 → NP_001117306.1  NDH dependent flow 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117306.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EB62, F4ICC6
      Conserved Domains (1) summary
      PLN00180
      Location:4 → 174
      PLN00180; NDF6 (NDH-dependent flow 6); Provisional

    5. NM_001332365.1 → NP_001321859.1  NDH dependent flow 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AS98
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RXS1.1

    Gene LinkOut

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