U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838027, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
    Primary source
    TAIR:AT1G14650
    Locus tag
    AT1G14650
    See related
    Araport:AT1G14650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5E21.13; T5E21_13
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (5027316..5031883)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SWAP (Suppressor-of-White-APricot)/surp domain-containing protein Neighboring gene uncharacterized protein Neighboring gene Na+/H+ exchanger 8 Neighboring gene ncRNA Neighboring gene Endomembrane protein 70 protein family

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001123817.1
    NM_001332131.1
    NM_101332.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of U2-type spliceosomal complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
    NP_001117289.1
    • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001319005.1
    • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 37228 Blast hits to 22919 proteins in 1210 species: Archae - 39; Bacteria - 4240; Metazoa - 16399; Fungi - 5145; Plants - 6055; Viruses - 891; Other Eukaryotes - 4459 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5027316..5031883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332131.1 → NP_001319005.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWB5, Q8RXF1, Q9MA20
      UniProtKB/TrEMBL
      A0A178W732, A0A5S9UH17, A0A654E9W6
      Conserved Domains (4) summary
      smart00648
      Location:69 → 121
      SWAP; Suppressor-of-White-APricot splicing regulator
      cd01800
      Location:702 → 778
      Ubl_SF3a120; ubiquitin-like (Ubl) domain found in splicing factor 3A 120kDa subunit (SF3a120) and similar proteins
      pfam09770
      Location:540 → 643
      PAT1; Topoisomerase II-associated protein PAT1
      pfam12230
      Location:262 → 470
      PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein

    2. NM_101332.4 → NP_172917.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172917.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWB5, Q8RXF1, Q9MA20
      UniProtKB/TrEMBL
      A0A178W732, A0A5S9UH17, A0A654E9W6
      Conserved Domains (4) summary
      smart00648
      Location:69 → 121
      SWAP; Suppressor-of-White-APricot splicing regulator
      cd01800
      Location:702 → 778
      Ubl_SF3a120; ubiquitin-like (Ubl) domain found in splicing factor 3A 120kDa subunit (SF3a120) and similar proteins
      pfam09770
      Location:540 → 643
      PAT1; Topoisomerase II-associated protein PAT1
      pfam12230
      Location:262 → 470
      PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein

    3. NM_001123817.1 → NP_001117289.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117289.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWB5, Q8RXF1, Q9MA20
      UniProtKB/TrEMBL
      A0A178W732, A0A5S9UH17, A0A654E9W6
      Conserved Domains (4) summary
      smart00648
      Location:69 → 121
      SWAP; Suppressor-of-White-APricot splicing regulator
      cd01800
      Location:702 → 778
      Ubl_SF3a120; ubiquitin-like (Ubl) domain found in splicing factor 3A 120kDa subunit (SF3a120) and similar proteins
      pfam09770
      Location:540 → 643
      PAT1; Topoisomerase II-associated protein PAT1
      pfam12230
      Location:262 → 470
      PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RXF1.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools