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    transcription factor jumonji (jmjC) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842529, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription factor jumonji (jmjC) domain-containing protein
    Primary source
    TAIR:AT1G62310
    Locus tag
    AT1G62310
    See related
    Araport:AT1G62310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24O1.3; F24O1_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (23033403..23039787, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ERD (early-responsive to dehydration stress) family protein Neighboring gene O-fucosyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis JMJ29 is involved in trichome development by regulating the core trichome initiation gene GLABRA3. Hung FY, et al. Plant J, 2020 Aug. PMID 32445267
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • At1g62310_Arabidopsis_lyrata_ssp._lyrata_CAN10 (e-PCR)
    • At1g62310_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_104911.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chromatin DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within epigenetic regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of trichome morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor jumonji (jmjC) domain-containing protein
    NP_176421.1
    • transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 795 Blast hits to 740 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 384; Fungi - 24; Plants - 360; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23033403..23039787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104911.3 → NP_176421.1  transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176421.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0SV12, O48794
      UniProtKB/TrEMBL
      A0A654EM01
      Conserved Domains (3) summary
      smart00558
      Location:617 → 690
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      pfam10497
      Location:209 → 273
      zf-4CXXC_R1; Zinc-finger domain of monoamine-oxidase A repressor R1
      cl21464
      Location:743 → 846
      cupin_like; Conserved domain found in cupin and related proteins
    Nucleotide Protein
    Heading Accession and Version

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