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    PLDEPSILON phospholipase D alpha 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841961, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PLDEPSILON
    Official Full Name
    phospholipase D alpha 4
    Primary source
    TAIR:AT1G55180
    Locus tag
    AT1G55180
    See related
    Araport:AT1G55180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7A10.25; F7A10_25; phospholipase D alpha 4; PLDALPHA4
    Summary
    member of C2-PLD. subfamily Represents a phospholipase D (PLD) gene with four exons, hence it is a member of the alpha class. Its amino acid sequence is quite different from other PLDs, therefore it might possess unique structural and/or catalytic properties.
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    Genomic context

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    See PLDEPSILON in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (20585008..20587723, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene PRA1 (Prenylated rab acceptor) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phospholipase Dε enhances Braasca napus growth and seed production in response to nitrogen availability. Lu S, et al. Plant Biotechnol J, 2016 Mar. PMID 26260942, Free PMC Article
    2. Phospholipase D epsilon and phosphatidic acid enhance Arabidopsis nitrogen signaling and growth. Hong Y, et al. Plant J, 2009 May. PMID 19143999, Free PMC Article
    3. The Arabidopsis phospholipase D family. Characterization of a calcium-independent and phosphatidylcholine-selective PLD zeta 1 with distinct regulatory domains. Qin C, et al. Plant Physiol, 2002 Mar. PMID 11891260, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The data indicate increased expression of PLDepsilon has the potential to improve crop plant growth and production under nitrogen-depleted and nitrogen-replete conditions.
      Title: Phospholipase Dε enhances Braasca napus growth and seed production in response to nitrogen availability.
    2. Over-expression of PLD-epsilon increases plant growth and root growth and biomass accumulation in response to nitrogen.
      Title: Phospholipase D epsilon and phosphatidic acid enhance Arabidopsis nitrogen signaling and growth.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N-acylphosphatidylethanolamine-specific phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipase D activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phospholipase D activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to nitrogen starvation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to phosphate starvation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to potassium ion starvation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within multidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in phosphatidylcholine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within phospholipid catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within phospholipid catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of nitrogen utilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within post-embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipase D alpha 4
    NP_175914.1
    • phospholipase D alpha 4 (PLDEPSILON); CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D alpha 1 (TAIR:AT3G15730.1); Has 1995 Blast hits to 1528 proteins in 409 species: Archae - 2; Bacteria - 580; Metazoa - 308; Fungi - 419; Plants - 534; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20585008..20587723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104391.2 → NP_175914.1  phospholipase D alpha 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175914.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C888
      UniProtKB/TrEMBL
      A0A5S9WM04, A0A654ENN9, A0A7G2E189
      Conserved Domains (1) summary
      PLN02352
      Location:3 → 762
      PLN02352; phospholipase D epsilon

    2. NM_001333692.1 → NP_001320457.1  phospholipase D alpha 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WA89, A0A1P8AMV3, A0A384LFU4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C888.1

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