rubisco accumulation factor-like protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: rubisco accumulation factor-like protein
Primary source: TAIR:AT3G04550
Locus tag: AT3G04550
See related: Araport:AT3G04550
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F7O18.2; F7O18_2
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 1

Sequence:: Chromosome: 3; NC_003074.8 (1225919..1227436)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Rubisco Accumulation Factor1-like (RAFL) interacts with RAF1 to mediate Rubisco assembly in Arabidopsis.
Title: Rubisco Accumulation Factor1-like (RAFL) interacts with RAF1 to mediate Rubisco assembly in Arabidopsis.
Raf1 from Synechococcus elongatus acts downstream of chaperonin-assisted RbcL folding by stabilizing RbcL antiparallel dimers for assembly into RbcL8 complexes with four Raf1 dimers bound. [Raf1]
Title: Structure and mechanism of the Rubisco-assembly chaperone Raf1.
These findings highlight the importance of ancillary protein complementarity during Rubisco biogenesis in plastids, the possible constraints this has imposed on Rubisco adaptive evolution.[AtRAF1]
Title: Improving recombinant Rubisco biogenesis, plant photosynthesis and growth by coexpressing its ancillary RAF1 chaperone.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_111326.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within ribulose bisphosphate carboxylase complex assembly	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in chloroplast stroma	HDA more info	PubMed
located_in cytosol	HDA more info	PubMed

General protein information

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Preferred Names: rubisco accumulation factor-like protein

NP_566230.1

unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

1225919..1227436

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_111326.1 → NP_566230.1 rubisco accumulation factor-like protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_566230.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9SR19

UniProtKB/TrEMBL

A0A178V6F9, A0A5S9X9Q0

Conserved Domains (3) summary

pfam18087
Location:288 → 435

RuBisCo_chap_C; Rubisco Assembly chaperone C-terminal domain

pfam18578
Location:155 → 264

Raf1_N; Rubisco accumulation factor 1 alpha helical domain

pfam18579
Location:83 → 143

Raf1_HTH; Rubisco accumulation factor 1 helix turn helix domain