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    Calcium-dependent ARF-type GTPase activating protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819985, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calcium-dependent ARF-type GTPase activating protein family
    Primary source
    TAIR:AT3G07940
    Locus tag
    AT3G07940
    See related
    Araport:AT3G07940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (2528997..2531573)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Translation initiation factor IF2/IF5 Neighboring gene DNA glycosylase superfamily protein Neighboring gene rhomboid protein-like protein Neighboring gene Phosphatidylinositol-4-phosphate 5-kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001337752.1
    NM_111673.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Calcium-dependent ARF-type GTPase activating protein family
    NP_187451.2
    • Calcium-dependent ARF-type GTPase activating protein family; FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent ARF-type GTPase activating protein family (TAIR:AT4G21160.4); Has 9376 Blast hits to 8361 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 5295; Fungi - 1386; Plants - 1701; Viruses - 0; Other Eukaryotes - 994 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2528997..2531573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111673.5 → NP_187451.2  Calcium-dependent ARF-type GTPase activating protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187451.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L7A4, Q9SFC0
      UniProtKB/TrEMBL
      A0A178VKS3, A0A5S9XA44
      Conserved Domains (2) summary
      cd04038
      Location:228 → 372
      C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)
      cd08204
      Location:50 → 156
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)

    2. NM_001337752.1 → NP_001325880.1  Calcium-dependent ARF-type GTPase activating protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMK1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L7A4.1

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