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    Ran BP2/NZF zinc finger-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820811, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ran BP2/NZF zinc finger-like superfamily protein
    Primary source
    TAIR:AT3G15680
    Locus tag
    AT3G15680
    See related
    Araport:AT3G15680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (5314817..5316617)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene glutaredoxin 4 Neighboring gene Late embryogenesis abundant protein (LEA) family protein Neighboring gene Single hybrid motif superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_112438.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ran BP2/NZF zinc finger-like superfamily protein
    NP_188189.1
    • Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT5G25490.1); Has 1825 Blast hits to 997 proteins in 170 species: Archae - 0; Bacteria - 2; Metazoa - 978; Fungi - 140; Plants - 475; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5314817..5316617
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338181.1 → NP_001326186.1  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPU9, A0A384LKB8, Q8L976, Q9LW11
      Conserved Domains (3) summary
      smart00547
      Location:63 → 88
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:7 → 26
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:127 → 156
      zf-RanBP; Zn-finger in Ran binding protein and others

    2. NM_112438.4 → NP_188189.1  Ran BP2/NZF zinc finger-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188189.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPU9, A0A384LKB8, Q8L976, Q9LW11
      Conserved Domains (3) summary
      smart00547
      Location:63 → 88
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:7 → 26
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:127 → 156
      zf-RanBP; Zn-finger in Ran binding protein and others
    Nucleotide Protein
    Heading Accession and Version

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