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    IDD11 indeterminate(ID)-domain 11 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820593, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IDD11
    Official Full Name
    indeterminate(ID)-domain 11
    Primary source
    TAIR:AT3G13810
    Locus tag
    AT3G13810
    See related
    Araport:AT3G13810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtIDD11; indeterminate(ID)-domain 11
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    Genomic context

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    See IDD11 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (4544364..4547513)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Glycosyl hydrolases family 32 protein Neighboring gene Metallo-hydrolase/oxidoreductase superfamily protein Neighboring gene ncRNA Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202954.1
    NM_112234.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    indeterminate(ID)-domain 11
    NP_001189882.1
    • indeterminate(ID)-domain 11 (IDD11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 7 (TAIR:AT1G55110.1).
    NP_001189883.1
    • indeterminate(ID)-domain 11 (IDD11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 7 (TAIR:AT1G55110.1).
    NP_187997.1
    • indeterminate(ID)-domain 11 (IDD11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 7 (TAIR:AT1G55110.1); Has 54110 Blast hits to 21919 proteins in 332 species: Archae - 0; Bacteria - 8; Metazoa - 48498; Fungi - 430; Plants - 766; Viruses - 2; Other Eukaryotes - 4406 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4544364..4547513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338084.1 → NP_001327022.1  indeterminate(ID)-domain 11 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JEJ5, F4JEJ6, Q700C1, Q9LRW7
      UniProtKB/TrEMBL
      A0A5S9XC82, A0A654F6X3

    2. NM_001338085.1 → NP_001327021.1  indeterminate(ID)-domain 11 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR14, A0A5S9XC82, A0A654F6X3

    3. NM_001202953.1 → NP_001189882.1  indeterminate(ID)-domain 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189882.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XC82, A0A654F6X3
      Conserved Domains (1) summary
      sd00017
      Location:179 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. NM_001338086.1 → NP_001327023.1  indeterminate(ID)-domain 11 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9Z5, A0A1I9LR16

    5. NM_001202954.1 → NP_001189883.1  indeterminate(ID)-domain 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189883.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9Z5
      Conserved Domains (1) summary
      sd00017
      Location:165 → 184
      ZF_C2H2; C2H2 Zn finger [structural motif]

    6. NM_112234.3 → NP_187997.1  indeterminate(ID)-domain 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187997.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JEJ5, F4JEJ6, Q700C1, Q9LRW7
      UniProtKB/TrEMBL
      A0A5S9XC82, A0A654F6X3
      Conserved Domains (1) summary
      sd00017
      Location:178 → 197
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LRW7.1

    Gene LinkOut

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