U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Cysteine proteinases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821796, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Cysteine proteinases superfamily protein
    Primary source
    TAIR:AT3G22260
    Locus tag
    AT3G22260
    See related
    Araport:AT3G22260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (7870826..7873597)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cysteine-rich/transmembrane domain PCC1-like protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene Topoisomerase II-associated protein PAT1 Neighboring gene jasmonate ZIM-domain protein Neighboring gene Endoplasmic reticulum vesicle transporter protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Lipid-mediated activation of plasma membrane-localized deubiquitylating enzymes modulate endosomal trafficking. Vogel K, et al. Nat Commun, 2022 Nov 12. PMID 36371501, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001203019.2
    NM_001338576.1
    NM_001338577.1
    NM_113124.3
    NM_202623.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Cysteine proteinases superfamily protein
    NP_001189948.1
    • Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G02070.1).
    NP_566704.1
    • Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G02070.1); Has 790 Blast hits to 782 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 319; Fungi - 70; Plants - 256; Viruses - 12; Other Eukaryotes - 133 (source: NCBI BLink).
    NP_974352.1
    • Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G02070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7870826..7873597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338575.1 → NP_001326674.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VDZ2, A0A178VG73, F4J076, Q0V869, Q8LF73, Q9LHJ1
      UniProtKB/TrEMBL
      A0A384LD07, A0A5S9XEI3
      Conserved Domains (1) summary
      cl19932
      Location:108 → 192
      OTU; OTU-like cysteine protease

    2. NM_202623.4 → NP_974352.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974352.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VDZ2, A0A178VG73, F4J076, Q0V869, Q8LF73, Q9LHJ1
      UniProtKB/TrEMBL
      A0A384LD07, A0A5S9XEI3
      Conserved Domains (1) summary
      cl19932
      Location:108 → 192
      OTU; OTU-like cysteine protease

    3. NM_113124.3 → NP_566704.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566704.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A384KDC3
      Conserved Domains (1) summary
      cl19932
      Location:108 → 192
      OTU; OTU-like cysteine protease

    4. NM_001203019.2 → NP_001189948.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189948.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VDZ2, A0A178VG73, F4J076, Q0V869, Q8LF73, Q9LHJ1
      UniProtKB/TrEMBL
      A0A384LD07, A0A5S9XEI3
      Conserved Domains (1) summary
      cl19932
      Location:108 → 192
      OTU; OTU-like cysteine protease

    5. NM_001338576.1 → NP_001326675.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VDZ2, A0A178VG73, F4J076, Q0V869, Q8LF73, Q9LHJ1
      UniProtKB/TrEMBL
      A0A384LD07, A0A5S9XEI3
      Conserved Domains (1) summary
      cl19932
      Location:108 → 192
      OTU; OTU-like cysteine protease

    6. NM_001338577.1 → NP_001326673.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VDZ2, A0A178VG73, F4J076, Q0V869, Q8LF73, Q9LHJ1
      UniProtKB/TrEMBL
      A0A384LD07, A0A5S9XEI3
      Conserved Domains (1) summary
      cl19932
      Location:108 → 192
      OTU; OTU-like cysteine protease
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0V869.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools