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    RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841945, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNI-like superfamily protein
    Primary source
    TAIR:AT1G55030
    Locus tag
    AT1G55030
    See related
    Araport:AT1G55030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14C21.30; F14C21_30
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (20530417..20532151, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene plant defensin 1.5 Neighboring gene miscRNA Neighboring gene lipoxygenase 1 Neighboring gene miscRNA Neighboring gene zinc finger (Ran-binding) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RNI-like superfamily protein
    NP_175901.1
    • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 1671 Blast hits to 1640 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 2; Plants - 1624; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20530417..20532151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333686.1 → NP_001321463.1  RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQZ2, A0A5S9WMF3

    2. NM_104377.1 → NP_175901.1  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175901.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C7M1
      UniProtKB/TrEMBL
      A0A178WG50, A0A5S9WMF3
      Conserved Domains (4) summary
      sd00032
      Location:133 → 154
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:154 → 179
      LRR_2; Leucine Rich Repeat
      pfam00646
      Location:11 → 53
      F-box; F-box domain
      pfam08387
      Location:345 → 389
      FBD
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C7M1.1

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