TGA6 TGACG motif-binding factor 6 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: TGA6
Official Full Name: TGACG motif-binding factor 6
Primary source: TAIR:AT3G12250
Locus tag: AT3G12250
See related: Araport:AT3G12250
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: BZIP45; TGACG motif-binding factor 6
Summary: basic leucine zipper transcription factor involved in the activation of SA-responsive genes.
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Genomic context

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See TGA6 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 12

Sequence:: Chromosome: 3; NC_003074.8 (3905423..3908983)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

TGA factors 2, 5, and 6 activate oxylipin-responsive gene expression but impede inhibition of root growth by oxylipins.
Title: TGA transcription factors and jasmonate-independent COI1 signalling regulate specific plant responses to reactive oxylipins.
data show TGA factors, which are essential for the salicylic acid (SA)-dependent establishment of systemic acquired resistance, play a pivotal role in the activation of the jasmonic acid/ethylene pathway, both after pathogen infection & hormone treatment
Title: Arabidopsis thaliana class-II TGA transcription factors are essential activators of jasmonic acid/ethylene-induced defense responses.
ABF2, an ABF subfamily member of bZIP proteins interacting with the ABA-responsive elements, is involved in Absicic ascid/stress responses. (bZIP) in arabidopsis.
Title: ABF2, an ABRE-binding bZIP factor, is an essential component of glucose signaling and its overexpression affects multiple stress tolerance.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001035601.1

Supported by ESTs:

NM_001084672.1

Supported by ESTs:

NM_001337984.1

Supported by ESTs:

NM_001337985.1

Supported by ESTs:

NM_112061.6

Supported by ESTs:

NM_202563.3

Supported by ESTs:

NM_202564.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IDA Inferred from Direct Assay more info	PubMed
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	IMP Inferred from Mutant Phenotype more info	PubMed
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables transcription cis-regulatory region binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of DNA-templated transcription	IDA Inferred from Direct Assay more info	PubMed
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within response to xenobiotic stimulus	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within systemic acquired resistance	IPI Inferred from Physical Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: TGACG motif-binding factor 6

NP_001030678.1

TGACG motif-binding factor 6 (TGA6); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06950.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_001078141.1

TGACG motif-binding factor 6 (TGA6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: systemic acquired resistance, response to xenobiotic stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06950.4); Has 847 Blast hits to 847 proteins in 67 species: Archae - 0; Bacteria - 14; Metazoa - 4; Fungi - 0; Plants - 779; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).

NP_566415.3

TGACG motif-binding factor 6 (TGA6); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), DNA/RNA non-specific endonuclease, active site (InterPro:IPR018524); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06950.4); Has 938 Blast hits to 938 proteins in 84 species: Archae - 0; Bacteria - 18; Metazoa - 12; Fungi - 10; Plants - 838; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).

NP_974292.1

TGACG motif-binding factor 6 (TGA6); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), DNA/RNA non-specific endonuclease, active site (InterPro:IPR018524); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06950.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_974293.1

TGACG motif-binding factor 6 (TGA6); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06950.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

3905423..3908983

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_202563.3 → NP_974292.1 TGACG motif-binding factor 6 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974292.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q39140, Q9C7D1, Q9LHI1

UniProtKB/TrEMBL

A0A178VJD3, A0A384KPR6, A1A6J5, Q67X98

Conserved Domains (3) summary

cd14686
Location:47 → 98

bZIP; coiled coil [structural motif]

pfam14144
Location:128 → 203

DOG1; Seed dormancy control

cl21462
Location:46 → 98

bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
NM_112061.6 → NP_566415.3 TGACG motif-binding factor 6 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_566415.3

Status: REVIEWED

UniProtKB/Swiss-Prot

Q39140, Q9C7D1, Q9LHI1

UniProtKB/TrEMBL

A0A178VJD3, A0A384KPR6, A1A6J5, Q67X98

Conserved Domains (3) summary

cd14686
Location:47 → 98

bZIP; coiled coil [structural motif]

pfam14144
Location:128 → 203

DOG1; Seed dormancy control

cl21462
Location:46 → 98

bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
NM_202564.2 → NP_974293.1 TGACG motif-binding factor 6 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974293.1

Status: REVIEWED

UniProtKB/TrEMBL

Q67X98

Conserved Domains (3) summary

cd14686
Location:41 → 92

bZIP; coiled coil [structural motif]

pfam14144
Location:122 → 198

DOG1; Seed dormancy control

cl21462
Location:40 → 92

bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
NM_001084672.1 → NP_001078141.1 TGACG motif-binding factor 6 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078141.1

Status: REVIEWED

UniProtKB/TrEMBL

A8MR70, Q67X98

Conserved Domains (3) summary

cd14686
Location:20 → 71

bZIP; coiled coil [structural motif]

pfam14144
Location:101 → 177

DOG1; Seed dormancy control

cl21462
Location:19 → 71

bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
NM_001337984.1 → NP_001326019.1 TGACG motif-binding factor 6 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q39140, Q9C7D1, Q9LHI1

UniProtKB/TrEMBL

A0A178VJD3, A0A384KPR6, A1A6J5, Q67X98

Conserved Domains (3) summary

cd14686
Location:47 → 98

bZIP; coiled coil [structural motif]

pfam14144
Location:128 → 203

DOG1; Seed dormancy control

cl21462
Location:46 → 98

bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
NM_001337985.1 → NP_001326020.1 TGACG motif-binding factor 6 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q39140, Q9C7D1, Q9LHI1

UniProtKB/TrEMBL

A0A178VJD3, A0A384KPR6, A1A6J5, Q67X98

Conserved Domains (3) summary

cd14686
Location:47 → 98

bZIP; coiled coil [structural motif]

pfam14144
Location:128 → 203

DOG1; Seed dormancy control

cl21462
Location:46 → 98

bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
NM_001035601.1 → NP_001030678.1 TGACG motif-binding factor 6 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001030678.1

Status: REVIEWED

UniProtKB/TrEMBL

F4J8P7, Q67X98

Conserved Domains (3) summary

cd14686
Location:72 → 123

bZIP; coiled coil [structural motif]

pfam14144
Location:153 → 229

DOG1; Seed dormancy control

cl21462
Location:71 → 123

bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain