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    TRM15 GPI-anchored adhesin-like protein, putative (DUF3741) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827901, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM15
    Official Full Name
    GPI-anchored adhesin-like protein, putative (DUF3741)
    Primary source
    TAIR:AT4G00440
    Locus tag
    AT4G00440
    See related
    Araport:AT4G00440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A_IG005I10.23; A_IG005I10_23; F5I10.23; F5I10_23; TON1 Recruiting Motif 15
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    Genomic context

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    See TRM15 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (193528..198582)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Double-stranded RNA-binding domain (DsRBD)-containing protein Neighboring gene plasma membrane intrinsic protein 1;4 Neighboring gene miscRNA Neighboring gene RNA polymerase II transcription mediator Neighboring gene RHO guanyl-nucleotide exchange factor 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084869.1
    NM_001084870.2
    NM_001340247.1
    NM_001340248.1
    NM_116269.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GPI-anchored adhesin-like protein, putative (DUF3741)
    NP_001078338.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1283 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 77; Metazoa - 265; Fungi - 74; Plants - 239; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
    NP_001319831.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1283 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 77; Metazoa - 265; Fungi - 74; Plants - 239; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
    NP_191954.3
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1239 Blast hits to 1045 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 262; Fungi - 79; Plants - 239; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      193528..198582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116269.4 → NP_191954.3  GPI-anchored adhesin-like protein, putative (DUF3741) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191954.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XQC9, C0Z263, Q7Y207
      Conserved Domains (2) summary
      pfam12552
      Location:202 → 244
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:660 → 792
      DUF4378; Domain of unknown function (DUF4378)

    2. NM_001084870.2 → NP_001078339.1  GPI-anchored adhesin-like protein, putative (DUF3741) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078339.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQN3, C0Z263
      Conserved Domains (2) summary
      pfam12552
      Location:202 → 245
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:660 → 792
      DUF4378; Domain of unknown function (DUF4378)

    3. NM_001340247.1 → NP_001319831.1  GPI-anchored adhesin-like protein, putative (DUF3741) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQN3, C0Z263
      Conserved Domains (2) summary
      pfam12552
      Location:202 → 245
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:660 → 792
      DUF4378; Domain of unknown function (DUF4378)

    4. NM_001084869.1 → NP_001078338.1  GPI-anchored adhesin-like protein, putative (DUF3741) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078338.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQI6, C0Z263
      Conserved Domains (2) summary
      pfam12552
      Location:202 → 245
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:660 → 792
      DUF4378; Domain of unknown function (DUF4378)

    5. NM_001340248.1 → NP_001328095.1  GPI-anchored adhesin-like protein, putative (DUF3741) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XQC9, C0Z263, Q7Y207
      Conserved Domains (2) summary
      pfam12552
      Location:202 → 244
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:660 → 792
      DUF4378; Domain of unknown function (DUF4378)
    Nucleotide Protein
    Heading Accession and Version

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