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    TBL23 TRICHOME BIREFRINGENCE-LIKE 23 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826710, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL23
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 23
    Primary source
    TAIR:AT4G11090
    Locus tag
    AT4G11090
    See related
    Araport:AT4G11090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22B4.70; T22B4_70; TRICHOME BIREFRINGENCE-LIKE 23
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL23 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (6764379..6766329, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene WRKY family transcription factor Neighboring gene HMG (high mobility group) box protein Neighboring gene ncRNA Neighboring gene gelsolin protein Neighboring gene SPA1-related 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Members of the DUF231 Family are O-Acetyltransferases Catalyzing 2-O- and 3-O-Acetylation of Mannan. Zhong R, et al. Plant Cell Physiol, 2018 Nov 1. PMID 30102392
    2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_117179.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi medial cisterna HDA PubMed 

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 23
    NP_192847.1
    • TRICHOME BIREFRINGENCE-LIKE 23 (TBL23); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 24 (TAIR:AT4G23790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6764379..6766329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117179.3 → NP_192847.1  TRICHOME BIREFRINGENCE-LIKE 23 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192847.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82509
      UniProtKB/TrEMBL
      A0A178UVF6, A0A346P848, A0A5S9XRZ4
      Conserved Domains (2) summary
      pfam13839
      Location:132 → 424
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:77 → 131
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82509.1

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