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    GR-RBP2 glycine-rich RNA-binding protein 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827019, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GR-RBP2
    Official Full Name
    glycine-rich RNA-binding protein 2
    Primary source
    TAIR:AT4G13850
    Locus tag
    AT4G13850
    See related
    Araport:AT4G13850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATGRP2; F18A5.240; F18A5_240; glycine rich protein 2; GLYCINE-RICH RNA-BINDING PROTEIN; glycine-rich RNA-binding protein 2; GLYCINE-RICH RNA-BINDING PROTEIN 2; GRP2
    Summary
    Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold.
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    Genomic context

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    See GR-RBP2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (8020713..8022476)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene DNAJ-like 20 Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Werner syndrome-like exonuclease Neighboring gene receptor like protein 48

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ORRM5, an RNA recognition motif-containing protein, has a unique effect on mitochondrial RNA editing. Shi X, et al. J Exp Bot, 2017 May 17. PMID 28549172, Free PMC Article
    2. Functional characterization of a glycine-rich RNA-binding protein 2 in Arabidopsis thaliana under abiotic stress conditions. Kim JY, et al. Plant J, 2007 May. PMID 17376161
    3. A Plant SMALL RNA-BINDING PROTEIN 1 Family Mediates Cell-to-Cell Trafficking of RNAi Signals. Yan Y, et al. Mol Plant, 2020 Feb 3. PMID 31812689
    4. A family of RRM-type RNA-binding proteins specific to plant mitochondria. Vermel M, et al. Proc Natl Acad Sci U S A, 2002 Apr 30. PMID 11972043, Free PMC Article
    5. Characterization of transgenic Arabidopsis plants overexpressing GR-RBP4 under high salinity, dehydration, or cold stress. Kwak KJ, et al. J Exp Bot, 2005 Nov. PMID 16207746

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the effect of ORRM5 on RNA editing might be mediated through the sequestration of other ORRM mitochondrial editing factors
      Title: ORRM5, an RNA recognition motif-containing protein, has a unique effect on mitochondrial RNA editing.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084916.1
    NM_001084917.1
    NM_117459.4
    NM_179046.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding HDA PubMed 
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables copper ion binding HDA PubMed 
    enables double-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables miRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables misfolded RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables siRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables single-stranded RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in cold acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in extracellular transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in miRNA transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of defense response to virus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycine-rich RNA-binding protein 2
    NP_001078385.1
    • GLYCINE-RICH RNA-BINDING PROTEIN 2 (ATGRP2); FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold, seed germination, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 4 (TAIR:AT3G23830.2); Has 139 Blast hits to 139 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001078386.1
    • GLYCINE-RICH RNA-BINDING PROTEIN 2 (ATGRP2); FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold, seed germination, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 4 (TAIR:AT3G23830.2); Has 139 Blast hits to 139 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_193121.1
    • glycine-rich RNA-binding protein 2 (GR-RBP2); FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold, seed germination, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 4 (TAIR:AT3G23830.2); Has 1220 Blast hits to 1220 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_849377.1
    • GLYCINE-RICH RNA-BINDING PROTEIN 2 (ATGRP2); FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold, seed germination, response to osmotic stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 4 (TAIR:AT3G23830.2); Has 51567 Blast hits to 28871 proteins in 1285 species: Archae - 24; Bacteria - 5307; Metazoa - 24718; Fungi - 5011; Plants - 11157; Viruses - 197; Other Eukaryotes - 5153 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8020713..8022476
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117459.4 → NP_193121.1  glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193121.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A6B9JA45, Q39105, Q41988, Q9SVM8
      UniProtKB/TrEMBL
      A0A178UU67, A0A5S9XSV5, A0A654FP54
      Conserved Domains (1) summary
      PLN03134
      Location:1 → 143
      PLN03134; glycine-rich RNA-binding protein 4; Provisional

    2. NM_001084916.1 → NP_001078385.1  glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078385.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FP54, A8MSB9
      Conserved Domains (2) summary
      PLN03134
      Location:1 → 144
      PLN03134; glycine-rich RNA-binding protein 4; Provisional
      cl17169
      Location:36 → 111
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. NM_179046.2 → NP_849377.1  glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849377.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FP54, F4JTU2
      Conserved Domains (2) summary
      PLN03134
      Location:1 → 153
      PLN03134; glycine-rich RNA-binding protein 4; Provisional
      cl17169
      Location:36 → 111
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. NM_001084917.1 → NP_001078386.1  glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078386.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRQ4
      Conserved Domains (2) summary
      PLN03134
      Location:1 → 122
      PLN03134; glycine-rich RNA-binding protein 4; Provisional
      cl17169
      Location:36 → 111
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SVM8.1

    Gene LinkOut

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