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    PA-domain containing subtilase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829125, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PA-domain containing subtilase family protein
    Primary source
    TAIR:AT4G30020
    Locus tag
    AT4G30020
    See related
    Araport:AT4G30020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6G3.50; F6G3_50
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (14677141..14681961)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Dihydropterin pyrophosphokinase / Dihydropteroate synthase Neighboring gene ATP-dependent RNA helicase Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341988.1
    NM_001341989.1
    NM_001341990.1
    NM_119148.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PA-domain containing subtilase family protein
    NP_567839.1
    • PA-domain containing subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system, cell wall, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8A, DUF1034 C-terminal (InterPro:IPR010435), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilisin-like serine protease 3 (TAIR:AT2G19170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14677141..14681961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119148.4 → NP_567839.1  PA-domain containing subtilase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567839.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZV5
      UniProtKB/TrEMBL
      A0A5S9XXW3, A0A654FUD2, A0A7G2F772
      Conserved Domains (5) summary
      cd04852
      Location:127 → 631
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:374 → 511
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:61 → 124
      Inhibitor_I9; Peptidase inhibitor I9
      pfam06280
      Location:698 → 810
      fn3_5; Fn3-like domain
      cl10459
      Location:535 → 673
      Peptidases_S8_S53; Peptidase domain in the S8 and S53 families

    2. NM_001341988.1 → NP_001328423.1  PA-domain containing subtilase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZV5
      UniProtKB/TrEMBL
      A0A5S9XXW3, A0A654FUD2, A0A7G2F772
      Conserved Domains (5) summary
      cd04852
      Location:127 → 631
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:374 → 511
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:61 → 124
      Inhibitor_I9; Peptidase inhibitor I9
      pfam06280
      Location:698 → 810
      fn3_5; Fn3-like domain
      cl10459
      Location:535 → 673
      Peptidases_S8_S53; Peptidase domain in the S8 and S53 families

    3. NM_001341989.1 → NP_001328424.1  PA-domain containing subtilase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZV5
      UniProtKB/TrEMBL
      A0A5S9XXW3, A0A654FUD2, A0A7G2F772
      Conserved Domains (5) summary
      cd04852
      Location:127 → 631
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:374 → 511
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:61 → 124
      Inhibitor_I9; Peptidase inhibitor I9
      pfam06280
      Location:698 → 810
      fn3_5; Fn3-like domain
      cl10459
      Location:535 → 673
      Peptidases_S8_S53; Peptidase domain in the S8 and S53 families

    4. NM_001341990.1 → NP_001328425.1  PA-domain containing subtilase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZV5
      UniProtKB/TrEMBL
      A0A5S9XXW3, A0A654FUD2, A0A7G2F772
      Conserved Domains (5) summary
      cd04852
      Location:127 → 631
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:374 → 511
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:61 → 124
      Inhibitor_I9; Peptidase inhibitor I9
      pfam06280
      Location:698 → 810
      fn3_5; Fn3-like domain
      cl10459
      Location:535 → 673
      Peptidases_S8_S53; Peptidase domain in the S8 and S53 families
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZV5.1

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