FP6 farnesylated protein 6 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: FP6
Official Full Name: farnesylated protein 6
Primary source: TAIR:AT4G38580
Locus tag: AT4G38580
See related: Araport:AT4G38580
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATFP6; F20M13.140; F20M13_140; farnesylated protein 6; HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26; HIPP26
Summary: putative farnesylated protein (At4g38580) mRNA, complete
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Genomic context

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See FP6 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 3

Sequence:: Chromosome: 4; NC_003075.7 (18034131..18035922)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

ACBP2 can mediate tolerance to Cd(II)-induced oxidative stress by interacting with two protein partners, AtFP6 and lysoPL2.
Title: Protein interactors of acyl-CoA-binding protein ACBP2 mediate cadmium tolerance in Arabidopsis.
AtFP6 mRNA was induced by cadmium (Cd(II)) in A. thaliana roots; plants overexpressing ACBP2 or AtFP6 were more tolerant to Cd(II) than wild-type plants.
Title: Arabidopsis thaliana acyl-CoA-binding protein ACBP2 interacts with heavy-metal-binding farnesylated protein AtFP6.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001342507.1

Supported by ESTs:

NM_120019.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables cadmium ion binding	IDA Inferred from Direct Assay more info	PubMed
enables copper ion binding	IDA Inferred from Direct Assay more info	PubMed
enables lead ion binding	IDA Inferred from Direct Assay more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within heat acclimation	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plasma membrane	HDA more info	PubMed
located_in plasmodesma	HDA more info	PubMed

General protein information

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Preferred Names: farnesylated protein 6

NP_001320160.1

farnesylated protein 6 (FP6); FUNCTIONS IN: metal ion binding; INVOLVED IN: heat acclimation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT4G35060.1); Has 1169 Blast hits to 1088 proteins in 38 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

18034131..18035922

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001342507.1 → NP_001320160.1 farnesylated protein 6 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8LGG1, Q9SZN7, Q9ZRE4

UniProtKB/TrEMBL

A0A178V1F5, A0A5S9Y0N7

Conserved Domains (1) summary

cd00371
Location:29 → 89

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
NM_120019.3 → NP_195570.1 farnesylated protein 6 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_195570.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8LGG1, Q9SZN7, Q9ZRE4

UniProtKB/TrEMBL

A0A178V1F5, A0A5S9Y0N7

Conserved Domains (1) summary

cd00371
Location:29 → 89

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...