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    ABCA2 ATP-binding cassette A2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823927, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABCA2
    Official Full Name
    ATP-binding cassette A2
    Primary source
    TAIR:AT3G47730
    Locus tag
    AT3G47730
    See related
    Araport:AT3G47730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A. THALIANA ABC2 HOMOLOG 1; ABC2 homolog 1; ATATH1; ATH1; ATP-binding cassette A2
    Summary
    member of ATH subfamily
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    Genomic context

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    See ABCA2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Sequence:
    Chromosome: 3; NC_003074.8 (17594060..17599083, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RINT-1 / TIP-1 family Neighboring gene BANQUO 3 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ABC2 homolog 2 Neighboring gene ATP binding cassette subfamily A4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114641.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATPase-coupled transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ATP-binding cassette A2
    NP_190357.2
    • ATP-binding cassette A2 (ABCA2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 11 (TAIR:AT5G61730.1); Has 380556 Blast hits to 352092 proteins in 4023 species: Archae - 7135; Bacteria - 302205; Metazoa - 7915; Fungi - 4655; Plants - 4588; Viruses - 7; Other Eukaryotes - 54051 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17594060..17599083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114641.4 → NP_190357.2  ATP-binding cassette A2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190357.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84K47, Q9STU0
      UniProtKB/TrEMBL
      A0A178V6R6, A0A5S9XJE8
      Conserved Domains (2) summary
      TIGR01257
      Location:186 → 861
      rim_protein; retinal-specific rim ABC transporter
      cd03263
      Location:518 → 751
      ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84K47.1

    Gene LinkOut

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