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    transducin family protein / WD-40 repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830440, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transducin family protein / WD-40 repeat family protein
    Primary source
    TAIR:AT5G05570
    Locus tag
    AT5G05570
    See related
    Araport:AT5G05570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MOP10.11; MOP10_11
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    24
    Sequence:
    Chromosome: 5; NC_003076.8 (1656481..1663929)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene small RNA degrading nuclease 2 Neighboring gene sequence-specific DNA binding transcription factor Neighboring gene E3 ubiquitin ligase Neighboring gene fatty acid desaturase 8 Neighboring gene phosphoribosylanthranilate isomerase 2 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpressed Tomosyn Binds Syntaxins and Blocks Secretion during Pollen Development. Li B, et al. Plant Physiol, 2019 Nov. PMID 31530628, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_120639.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNARE binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in late endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transducin family protein / WD-40 repeat family protein
    NP_001190229.1
    • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: methyltransferase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: vesicle-mediated transport, methylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052), WD40 repeat, subgroup (InterPro:IPR019781), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G35560.2).
    NP_196176.1
    • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: methyltransferase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: vesicle-mediated transport, methylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052), WD40 repeat, subgroup (InterPro:IPR019781), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G35560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1656481..1663929
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203300.2 → NP_001190229.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190229.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UI43, A0A654FYI9, F4K0R0
      Conserved Domains (3) summary
      cd15873
      Location:1035 → 1092
      R-SNARE_STXBP5_6; SNARE domain of STXBP5, STXBP6 and related proteins
      sd00039
      Location:88 → 114
      7WD40; WD40 repeat [structural motif]
      pfam12894
      Location:254 → 317
      ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain

    2. NM_120639.2 → NP_196176.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196176.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UI43, Q9FFF8
      Conserved Domains (2) summary
      cd15873
      Location:1060 → 1117
      R-SNARE_STXBP5_6; SNARE domain of STXBP5, STXBP6 and related proteins
      sd00039
      Location:88 → 114
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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