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    SYP31 syntaxin of plants 31 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830461, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SYP31
    Official Full Name
    syntaxin of plants 31
    Primary source
    TAIR:AT5G05760
    Locus tag
    AT5G05760
    See related
    Araport:AT5G05760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSED5; ATSYP31; MJJ3.17; MJJ3_17; SED5; syntaxin of plants 31; T-SNARE SED 5
    Summary
    A SNARE protein (ortholog of syntaxin 5), a membrane fusion machine component involved in cytokinesis
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    Genomic context

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    See SYP31 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (1728893..1731090, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ethylene-dependent gravitropism-deficient and yellow-green-like 2 Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene WUSCHEL related homeobox 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel di-acidic motif facilitates ER export of the syntaxin SYP31. Chatre L, et al. J Exp Bot, 2009. PMID 19516076, Free PMC Article
    2. The syntaxins SYP31 and SYP81 control ER-Golgi trafficking in the plant secretory pathway. Bubeck J, et al. Traffic, 2008 Sep. PMID 18764818
    3. Characterization of AtCDC48. Evidence for multiple membrane fusion mechanisms at the plane of cell division in plants. Rancour DM, et al. Plant Physiol, 2002 Nov. PMID 12427991, Free PMC Article
    4. Syntaxin of plants31 (SYP31) and SYP32 is essential for Golgi morphology maintenance and pollen development. Rui Q, et al. Plant Physiol, 2021 May 27. PMID 33576796, Free PMC Article
    5. Selective mobility and sensitivity to SNAREs is exhibited by the Arabidopsis KAT1 K+ channel at the plasma membrane. Sutter JU, et al. Plant Cell, 2006 Apr. PMID 16531497, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Syntaxin of plants31 (SYP31) and SYP32 is essential for Golgi morphology maintenance and pollen development.
      Title: Syntaxin of plants31 (SYP31) and SYP32 is essential for Golgi morphology maintenance and pollen development.
    2. A novel and transplantable di-acidic motif facilitates Endoplasmic Reticulum export of SYP31.
      Title: A novel di-acidic motif facilitates ER export of the syntaxin SYP31.
    3. Evidence for SNARE-mediated traffic of the K(+) channel and a role in its distribution within subdomains of the plasma membrane.
      Title: Selective mobility and sensitivity to SNAREs is exhibited by the Arabidopsis KAT1 K+ channel at the plasma membrane.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120658.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables SNAP receptor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within intracellular protein transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within membrane fusion TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within protein secretion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cell plate IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin of plants 31
    NP_196195.1
    • syntaxin of plants 31 (SYP31); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 32 (TAIR:AT3G24350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1728893..1731090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120658.5 → NP_196195.1  syntaxin of plants 31 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196195.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65099, Q9FFK1
      UniProtKB/TrEMBL
      A0A178U903, A0A5S9Y200, A0A654FYP8
      Conserved Domains (1) summary
      cd15844
      Location:247 → 331
      SNARE_syntaxin5; SNARE motif of syntaxin 5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFK1.1

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