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    DEAD box RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831313, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DEAD box RNA helicase family protein
    Primary source
    TAIR:AT5G14610
    Locus tag
    AT5G14610
    See related
    Araport:AT5G14610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T15N1.100; T15N1_100
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (4710563..4715076)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene methyltransferase-like protein Neighboring gene domains rearranged methyltransferase 2 Neighboring gene shaggy-like kinase 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing. Palm D, et al. Nucleic Acids Res, 2019 Feb 28. PMID 30576513, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203380.1
    NM_001343349.1
    NM_121465.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DEAD box RNA helicase family protein
    NP_001190309.1
    • DEAD box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase 1 (TAIR:AT3G01540.4).
    NP_196965.2
    • DEAD box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase 1 (TAIR:AT3G01540.1); Has 72370 Blast hits to 57752 proteins in 3325 species: Archae - 968; Bacteria - 36637; Metazoa - 12013; Fungi - 6274; Plants - 5549; Viruses - 294; Other Eukaryotes - 10635 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4710563..4715076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343347.1 → NP_001331249.1  DEAD box RNA helicase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDA3, A0A5S9Y4F5, A0A654G126

    2. NM_001343348.1 → NP_001331250.1  DEAD box RNA helicase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKP6, A0A1P8BDA2, A0A7G2FEL2
      Conserved Domains (2) summary
      PTZ00110
      Location:66 → 555
      PTZ00110; helicase; Provisional
      pfam00397
      Location:17 → 47
      WW; WW domain

    3. NM_001343345.1 → NP_001331252.1  DEAD box RNA helicase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UJF6, A0A1P8BDA9

    4. NM_001343346.1 → NP_001331248.1  DEAD box RNA helicase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDE7

    5. NM_121465.4 → NP_196965.2  DEAD box RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196965.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F7N2, F4K6V1
      Conserved Domains (5) summary
      cd00079
      Location:448 → 576
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:231 → 435
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      PTZ00110
      Location:66 → 623
      PTZ00110; helicase; Provisional
      pfam00397
      Location:17 → 47
      WW; WW domain
      pfam15046
      Location:124 → 190
      DUF4532; Protein of unknown function (DUF4532)

    6. NM_001203380.1 → NP_001190309.1  DEAD box RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190309.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQ84, Q9LYJ9
      UniProtKB/TrEMBL
      A0A178UKP6, A0A7G2FDP6
      Conserved Domains (2) summary
      PTZ00110
      Location:66 → 555
      PTZ00110; helicase; Provisional
      pfam00397
      Location:17 → 47
      WW; WW domain

    7. NM_001343349.1 → NP_001331251.1  DEAD box RNA helicase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UJF6, A0A1P8BDA9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYJ9.2

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