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    Zinc-finger domain of monoamine-oxidase A repressor R1 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833859, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zinc-finger domain of monoamine-oxidase A repressor R1 protein
    Primary source
    TAIR:AT5G38690
    Locus tag
    AT5G38690
    See related
    Araport:AT5G38690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBB18.24; MBB18_24
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    14
    Sequence:
    Chromosome: 5; NC_003076.8 (15478701..15483250, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Proteasome maturation factor UMP1 Neighboring gene acclimation of photosynthesis to environment Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene cotton fiber protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. Tan LM, et al. Plant Cell, 2020 Jul. PMID 32358072, Free PMC Article
    2. A plant-specific SWR1 chromatin-remodeling complex couples histone H2A.Z deposition with nucleosome sliding. Luo YX, et al. EMBO J, 2020 Apr 1. PMID 32115743, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001344261.1
    NM_123230.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ISWI-type complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Zinc-finger domain of monoamine-oxidase A repressor R1 protein
    NP_001318699.1
    • Zinc-finger domain of monoamine-oxidase A repressor R1 protein; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), DDT domain, subgroup (InterPro:IPR018500), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 protein (TAIR:AT1G67270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15478701..15483250 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344261.1 → NP_001318699.1  Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UNS3, Q8RW95

    2. NM_123230.4 → NP_198685.2  Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198685.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UNS3, Q8RW95
      Conserved Domains (2) summary
      smart00571
      Location:270 → 335
      DDT; domain in different transcription and chromosome remodeling factors
      pfam10497
      Location:25 → 123
      zf-4CXXC_R1; Zinc-finger domain of monoamine-oxidase A repressor R1
    Nucleotide Protein
    Heading Accession and Version

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