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    SMC2 structural maintenance of chromosomes 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836362, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SMC2
    Official Full Name
    structural maintenance of chromosomes 2
    Primary source
    TAIR:AT5G62410
    Locus tag
    AT5G62410
    See related
    Araport:AT5G62410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCAP-E1; ATSMC4; MMI9.19; MMI9_19; structural maintenance of chromosomes 2; TITAN 3; TTN3
    Summary
    SMC2-1 (SMC2)
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    Genomic context

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    See SMC2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    20
    Sequence:
    Chromosome: 5; NC_003076.8 (25056025..25062670)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NAC-domain protein 101 Neighboring gene BCL-2-associated athanogene 7 Neighboring gene uncharacterized protein Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cycling DOF factor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Condensin and cohesin knockouts in Arabidopsis exhibit a titan seed phenotype. Liu Cm CM, et al. Plant J, 2002 Feb. PMID 11846874
    2. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125635.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of condensin complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    structural maintenance of chromosomes 2
    NP_201047.1
    • structural maintenance of chromosomes 2 (SMC2); FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: condensin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: Structural maintenance of chromosomes (SMC) family protein (TAIR:AT3G47460.1); Has 126046 Blast hits to 65003 proteins in 3391 species: Archae - 1784; Bacteria - 23628; Metazoa - 52968; Fungi - 10094; Plants - 6737; Viruses - 431; Other Eukaryotes - 30404 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25056025..25062670
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125635.3 → NP_201047.1  structural maintenance of chromosomes 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201047.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C5Y4, Q9FJK1, Q9FUY9
      UniProtKB/TrEMBL
      A0A178UJV6
      Conserved Domains (5) summary
      cd03273
      Location:1 → 156
      ABC_SMC2_euk; ATP-binding cassette domain of eukaryotic SMC2 proteins
      smart00968
      Location:520 → 637
      SMC_hinge; SMC proteins Flexible Hinge Domain
      COG1196
      Location:1 → 1166
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam01517
      Location:908 → 1029
      HDV_ag; Hepatitis delta virus delta antigen
      cl21455
      Location:1073 → 1167
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5Y4.2

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