U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CEBPZOS CEBPZ opposite strand [ Homo sapiens (human) ]

    Gene ID: 100505876, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CEBPZOSprovided by HGNC
    Official Full Name
    CEBPZ opposite strandprovided by HGNC
    Primary source
    HGNC:HGNC:49288
    See related
    Ensembl:ENSG00000218739 AllianceGenome:HGNC:49288
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CEBPZ-AS1
    Summary
    Located in mitochondrion. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in adrenal (RPKM 10.4), thyroid (RPKM 9.4) and 25 other tissues See more
    Orthologs
    mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CEBPZOS in Genome Data Viewer
    Location:
    2p22.2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (37196496..37216193)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (37203587..37223255)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (37423639..37443336)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11353 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15580 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11354 Neighboring gene ARL14EP pseudogene 1 Neighboring gene sulfotransferase family 6B member 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:37416294-37416819 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:37416820-37417344 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11355 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:37431745-37432548 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:37432549-37433353 Neighboring gene ribosomal protein L31 pseudogene 16 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:37441863-37443062 Neighboring gene CCAAT enhancer binding protein zeta Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:37453022-37453626 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:37458084-37459283 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 7 Neighboring gene protein kinase D3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15582 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11356 Neighboring gene PRKD3 divergent transcript

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteomic mapping of the human mitochondrial intermembrane space in live cells via ratiometric APEX tagging. Hung V, et al. Mol Cell, 2014 Jul 17. PMID 25002142, Free PMC Article
    2. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
    3. Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Gordon DE, et al. Science, 2020 Dec 4. PMID 33060197, Free PMC Article
    4. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
    5. USP9X deubiquitinates and stabilizes CDC123 to promote breast carcinogenesis through regulating cell cycle. Song N, et al. Mol Carcinog, 2023 Oct. PMID 37314216

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    located_in mitochondrial membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion HTP PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein CEBPZOS
    Names
    CEBPZ antisense RNA 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001322373.2 → NP_001309302.1  protein CEBPZOS

      Status: VALIDATED

      Source sequence(s)
      AC007390
      Consensus CDS
      CCDS82435.1
      UniProtKB/Swiss-Prot
      A8MTT3, A8MUR5
      Related
      ENSP00000384813.1, ENST00000406711.5

    2. NM_001322374.2 → NP_001309303.1  protein CEBPZOS

      Status: VALIDATED

      Source sequence(s)
      AC007390
      Consensus CDS
      CCDS82435.1
      UniProtKB/Swiss-Prot
      A8MTT3, A8MUR5
      Related
      ENSP00000384331.1, ENST00000402297.6

    3. NM_001322375.2 → NP_001309304.1  protein CEBPZOS

      Status: VALIDATED

      Source sequence(s)
      AC007390
      Consensus CDS
      CCDS82435.1
      UniProtKB/Swiss-Prot
      A8MTT3, A8MUR5
      Related
      ENSP00000383895.1, ENST00000392061.6

    4. NM_001322376.2 → NP_001309305.1  protein CEBPZOS

      Status: VALIDATED

      Source sequence(s)
      AC007390
      Consensus CDS
      CCDS82435.1
      UniProtKB/Swiss-Prot
      A8MTT3, A8MUR5

    RNA

    1. NR_136316.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007390

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      37196496..37216193
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017003108.3 → XP_016858597.1  protein CEBPZOS isoform X1

      UniProtKB/Swiss-Prot
      A8MTT3, A8MUR5
      Related
      ENSP00000380254.2, ENST00000397064.6

    2. XM_017003107.2 → XP_016858596.1  protein CEBPZOS isoform X1

      UniProtKB/Swiss-Prot
      A8MTT3, A8MUR5

    3. XM_017003106.2 → XP_016858595.1  protein CEBPZOS isoform X1

      UniProtKB/Swiss-Prot
      A8MTT3, A8MUR5
      Related
      ENSP00000380403.2, ENST00000397226.2

    RNA

    1. XR_007068206.1 RNA Sequence

    2. XR_007068208.1 RNA Sequence

    3. XR_007068207.1 RNA Sequence

    4. XR_007068209.1 RNA Sequence

    5. XR_007068210.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      37203587..37223255
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054340075.1 → XP_054196050.1  protein CEBPZOS isoform X1

      UniProtKB/Swiss-Prot
      A8MTT3, A8MUR5

    2. XM_054340074.1 → XP_054196049.1  protein CEBPZOS isoform X1

      UniProtKB/Swiss-Prot
      A8MTT3, A8MUR5

    3. XM_054340073.1 → XP_054196048.1  protein CEBPZOS isoform X1

      UniProtKB/Swiss-Prot
      A8MTT3, A8MUR5

    RNA

    1. XR_008486247.1 RNA Sequence

    2. XR_008486244.1 RNA Sequence

    3. XR_008486246.1 RNA Sequence

    4. XR_008486245.1 RNA Sequence

    5. XR_008486248.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A8MTT3.2 GenPept UniProtKB/Swiss-Prot:A8MTT3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials